RetrogeneDB ID: retro_meug_2136

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold93399:1572..2013(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NRAS
• Ensembl ID: ENSMEUG00000002675
• Aliases: None
• Description: neuroblastoma RAS viral (v-ras) oncogene homolog [Source:HGNC Symbol;Acc:7989]

Sequence

>retro_meug_2136
TATAAGGTGGTGGTGATGGGCAGCTCTAGTGTGGGCAAGAGCGCGCTGACCATCCAGCTGGTAAAGAACTGCTTCGTGCC
GGACCATGACCCCACCATTGAAGACTCCTACCGCACCCAACTGATGGTGGATGGCAAATCCTGCCAGCTGGACATCCTCG
ACACCACAGGCAGCCAGGAGTACCAGATCTGGCACCAGGAGTTCATGCGCTGGGGAGAGGGCTTCCTCTGCATCTACGCA
GTGGATGACATGAAGTCCTTTGTGGATGTGAACATCTTCTGGAACCAGCTGCACAGGGTGAAGGACACCGACCGCGTTCC
CTTTGTCCTTGTGGCTAATAAGACGGACCTGCCCGACGACCTGGTGACCCCGACGCTGGGCCAGGAAATGGCCAAGAGCT
TCAGGGTCCCCTTTGTGGAGGCCTCGGCCAAGACTCGGAAG

Alignment

ORF - retro_meug_2136 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.46 %
• Parental protein coverage: 98.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR
          YK.VV.G...VGKSALTIQL..N.FV...DPTIEDSYR.Q...DG..C.LDILDT.G..EY.......MR
Retrocopy YKVVVMGSSSVGKSALTIQLVKNCFVPDHDPTIEDSYRTQLMVDGKSCQLDILDTTGSQEYQIWHQEFMR

Parental  TGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIE
          .GEGFLC..A....KSF.D.N....Q..RVKD.D.VP.VLV.NK.DLP...V......E.AKS...PF.E
Retrocopy WGEGFLCIYAVDDMKSFVDVNIFWNQLHRVKDTDRVPFVLVANKTDLPDDLVTPTLGQEMAKSFRVPFVE

Parental  TSAKTRQ
          .SAKTR.
Retrocopy ASAKTRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2136 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2136 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017134	1 retrocopy	retro_amel_885,
Callithrix jacchus	ENSCJAG00000036517	1 retrocopy	retro_cjac_2400,
Felis catus	ENSFCAG00000019026	1 retrocopy	retro_fcat_1191,
Loxodonta africana	ENSLAFG00000020706	1 retrocopy	retro_lafr_492,
Macropus eugenii	ENSMEUG00000000259	1 retrocopy	retro_meug_1638,
Macropus eugenii	ENSMEUG00000002675	1 retrocopy	retro_meug_2136 ,
Macropus eugenii	ENSMEUG00000008467	1 retrocopy	retro_meug_852,
Myotis lucifugus	ENSMLUG00000022354	1 retrocopy	retro_mluc_741,
Monodelphis domestica	ENSMODG00000004590	1 retrocopy	retro_mdom_51,
Oryctolagus cuniculus	ENSOCUG00000022455	1 retrocopy	retro_ocun_850,
Rattus norvegicus	ENSRNOG00000023079	2 retrocopies	retro_rnor_2867, retro_rnor_619,
Sus scrofa	ENSSSCG00000006753	1 retrocopy	retro_sscr_520,