RetrogeneDB ID: | retro_fcat_1410 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:75252401..75252801(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDZD11 | ||
Ensembl ID: | ENSFCAG00000008633 | ||
Aliases: | None | ||
Description: | PDZ domain containing 11 [Source:HGNC Symbol;Acc:28034] |
Percent Identity: | 61.76 % |
Parental protein coverage: | 95. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MDSRIPYDDYPVVFLPAYENPPAWIPPHERVYHPDYNNELT-QFLPR-IVTLKKPPGAQLGFNIRGGKAS |
MDS.I..DDY..VFL.A.ENPPA.IPP...V.H..Y..EL...F.P....TL.KPPGAQLG.NI..G.AS | |
Retrocopy | MDSQILHDDYLAVFLHACENPPA*IPPQKMVHHTHYSDELRHSFCPQ<VLTLTKPPGAQLGLNIQRGRAS |
Parental | QLGIFIS-KVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISMRVRFFPYNYHR |
QLG.F.S.K.IPD..AH..GLQ..DQ.L.VNDVDF.DIEHSKAVEILKTA..IS..V.F..Y...R | |
Retrocopy | QLGDFFS<KMIPDLGAH*TGLQKRDQTLGVNDVDF*DIEHSKAVEILKTAGKISTCVCFSLYK*RR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .90 RPM |
SRP017611_kidney | 0 .10 RPM | 11 .03 RPM |
SRP017611_liver | 0 .00 RPM | 6 .47 RPM |