Parental gene:

PDZD11, ENSPTRG00000021995

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:X:69996484..70000378(-)


>ENSPTRG00000021995
ATGGACAGCCGGATTCCTTATGATGACTACCCAGTGGTTTTCTTGCCTGCCTATGAGAATCCTCCAGCATGGATTCCTCC
TCATGAGAGGGTACACCACCCGGACTACAACAATGAGTTGACCCAGTTTCTGCCCCGAACCATCACACTGAAGAAGCCTC
CTGGAGCTCAGTTGGGATTTAACATCCGAGGAGGAAAGGCCTCCCAGCTAGGCATCTTCATCTCCAAGGTGATTCCTGAC
TCTGATGCACACAGAGCAGGACTGCAGGAAGGGGACCAAGTTCTAGCTGTGAATGATGTGGATTTCCAAGATATTGAGCA
CAGCAAGGCTGTTGAGATCCTGAAGACAGCTCGTGAAATCAGCATGCGTGTGCGCTTCTTTCCCTACAATTATCATCGCC
AAAAAGAGAGGACTGTGCACTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 19 .25 RPM
SRP007412_cerebellum 12 .48 RPM
SRP007412_heart 12 .24 RPM
SRP007412_kidney 21 .47 RPM
SRP007412_liver 8 .81 RPM
SRP007412_testis 2 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009203 ortholog_one2many 1 retrogene
retro_amel_158,
Bos taurus ENSBTAG00000012860 ortholog_one2one 1 retrogene
retro_btau_594,
Canis familiaris ENSCAFG00000028800 ortholog_one2one 1 retrogene
retro_cfam_1549,
Callithrix jacchus ENSCJAG00000012432 ortholog_one2many 1 retrogene
retro_cjac_138,
Cavia porcellus ENSCPOG00000000210 ortholog_one2one 1 retrogene
retro_cpor_143,
Equus caballus ENSECAG00000010771 ortholog_one2one 1 retrogene
retro_ecab_940,
Echinops telfairi ENSETEG00000008626 ortholog_one2one 3 retrogenes
retro_etel_1026, retro_etel_1863, retro_etel_921,
Felis catus ENSFCAG00000008633 ortholog_one2one 3 retrogenes
retro_fcat_1356, retro_fcat_1410, retro_fcat_263,
Homo sapiens ENSG00000120509 ortholog_one2one 1 retrogene
retro_hsap_1439,
Gorilla gorilla ENSGGOG00000006626 ortholog_one2one 1 retrogene
retro_ggor_1108,
Macropus eugenii ENSMEUG00000012040 ortholog_one2one 1 retrogene
retro_meug_1858,
Macaca mulatta ENSMMUG00000013938 ortholog_one2one 1 retrogene
retro_mmul_2265,
Mustela putorius furo ENSMPUG00000004220 ortholog_one2one 1 retrogene
retro_mputfur_823,
Nomascus leucogenys ENSNLEG00000000863 ortholog_one2one 1 retrogene
retro_nleu_1414,
Oryctolagus cuniculus ENSOCUG00000017101 ortholog_one2one 2 retrogenes
retro_ocun_1208, retro_ocun_1945,
Otolemur garnettii ENSOGAG00000016423 ortholog_one2one 1 retrogene
retro_ogar_2975,
Ochotona princeps ENSOPRG00000001811 ortholog_one2one 1 retrogene
retro_opri_374,
Pongo abelii ENSPPYG00000020929 ortholog_one2one 1 retrogene
retro_pabe_1193,
Rattus norvegicus ENSRNOG00000002838 ortholog_one2one 1 retrogene
retro_rnor_615,
Sarcophilus harrisii ENSSHAG00000005380 ortholog_one2one 1 retrogene
retro_shar_149,
Ictidomys tridecemlineatus ENSSTOG00000027107 ortholog_one2one 2 retrogenes
retro_itri_1264, retro_itri_1702,
Tupaia belangeri ENSTBEG00000002767 ortholog_one2one 2 retrogenes
retro_tbel_3155, retro_tbel_3203,
Tursiops truncatus ENSTTRG00000007864 ortholog_one2one 1 retrogene
retro_ttru_953,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_981 93.57 100.00
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Download FASTA sequences of all ENSPTRG00000021995 retrocopies