RetrogeneDB ID: | retro_fcat_1672 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E1:41447184..41447642(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NME4 | ||
Ensembl ID: | ENSFCAG00000008300 | ||
Aliases: | None | ||
Description: | NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:7852] |
Percent Identity: | 66.46 % |
Parental protein coverage: | 96.34 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | SQGGSSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFK-LVGMKMLQAPETVLAEHYHDLRRKP-FYPA |
..GGSSWT.E.TL.AVK.DG.Q..LVGDVI..FERRGFK...GMKMLQAPE..L.......RR.P.F..A | |
Retrocopy | NSGGSSWTQEWTLTAVKSDGMQQQLVGDVILCFERRGFK>RLGMKMLQAPES-LPSTVVTCRRSP<F**A |
Parental | LISYMTSG-PVVAMVWEGPNVVCSSRAMIGHTNSAEAAPGTIRGDFSIHISRNIVHASDSVEGAQREIQL |
L.S...SG..V.AMVWEG..VV.SSRA.IGH..SAE.AP.TIRGDFSIHIS....H.SDS.EGAQ.EIQL | |
Retrocopy | LLSCGSSG<LVAAMVWEGLDVVWSSRALIGHSDSAETAPDTIRGDFSIHIS----HTSDSMEGAQTEIQL |
Parental | WFQSSELVDWAEEGHQSSTYP |
WF.SSELVDWA.E..QSS.YP | |
Retrocopy | WFPSSELVDWADEANQSSIYP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .31 RPM |
SRP017611_liver | 0 .00 RPM | 16 .48 RPM |