Parental gene:

ENSCAFG00000019677

Aliases:None
Description:Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:F1PEZ2]
Organism:Dog (Canis familiaris)
Coordinates:6:40119853..40122431(-)


>ENSCAFG00000019677
GCTCGCCAGCGGCCCGCGGGCCGGGGTCATGGGCGGCGTCTTGGGGCGCGCCGCGCTGCCGGGCTGATGCGTGGCCCGCG
GGCCCCCGGGCCTTGCCTGCTCGCGCGCTCCAACTCGGGAGGGTCCTCCTGGACTCGAGAGCGGACCCTGGTTGCAGTGA
AGCCGGATGGGGTGCAGCGGCGGCTTGTGGGGGACGTGATCCAGCGCTTTGAGAGGAGGGGCTTCAAGCTGGTGGGGATG
AAGATGCTGCAGGCACCAGAGAGAGTCCTTGCTGAGCACTACCATGACCTGCAGAGGAAGCCCTTCTACCCATCGCTCAT
CAGCTACATGACCTCCGGCCCTGTGGTGGCCATGGTCTGGGAAGGCCCCAATGTGGTCTGCTCCTCGAGGACCATGATAG
GACACACCGACTCAGCTGAGGCCGCCCCCGGCACCATCAGGGGGGACTTCAGTGTCCACATCAGCAGGAACATCATTCAT
GCCAGCGACTCTGTGGAGGGGGCCCGGAGGGAGATCCAGCTATGGTTTCAGAGCAGTGAGCTGGTGGACTGGGCAGACGA
AAACCACCACAGCAGCATCTACGCAGCCTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 14 .53 RPM
SRP017611_brain 8 .73 RPM
SRP017611_kidney 60 .69 RPM
SRP017611_liver 21 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007077 ortholog_one2many 3 retrogenes
retro_amel_1271, retro_amel_216, retro_amel_238,
Canis familiaris ENSCAFG00000023628 within_species_paralog 7 retrogenes
retro_cfam_117, retro_cfam_1645, retro_cfam_37, retro_cfam_676, retro_cfam_69, retro_cfam_832, retro_cfam_96,
Cavia porcellus ENSCPOG00000006496 ortholog_one2many 1 retrogene
retro_cpor_1076,
Echinops telfairi ENSETEG00000014875 possible_ortholog 1 retrogene
retro_etel_1833,
Felis catus ENSFCAG00000008300 ortholog_one2many 3 retrogenes
retro_fcat_1013, retro_fcat_1512, retro_fcat_1672,
Homo sapiens ENSG00000103202 ortholog_one2many 1 retrogene
retro_hsap_1740,
Gorilla gorilla ENSGGOG00000004512 ortholog_one2many 1 retrogene
retro_ggor_2259,
Macropus eugenii ENSMEUG00000005455 ortholog_one2many 5 retrogenes
retro_meug_1027, retro_meug_1427, retro_meug_1981, retro_meug_1999, retro_meug_694,
Myotis lucifugus ENSMLUG00000010061 ortholog_one2many 1 retrogene
retro_mluc_388,
Macaca mulatta ENSMMUG00000000612 ortholog_one2many 1 retrogene
retro_mmul_1221,
Mustela putorius furo ENSMPUG00000016017 ortholog_one2many 3 retrogenes
retro_mputfur_1024, retro_mputfur_1067, retro_mputfur_846,
Mus musculus ENSMUSG00000024177 ortholog_one2many 1 retrogene
retro_mmus_309,
Nomascus leucogenys ENSNLEG00000008068 ortholog_one2many 1 retrogene
retro_nleu_2719,
Otolemur garnettii ENSOGAG00000025808 ortholog_one2many 1 retrogene
retro_ogar_2689,
Pongo abelii ENSPPYG00000006908 ortholog_one2many 1 retrogene
retro_pabe_1442,
Pan troglodytes ENSPTRG00000007541 ortholog_one2many 1 retrogene
retro_ptro_1220,
Rattus norvegicus ENSRNOG00000049152 ortholog_one2many 1 retrogene
retro_rnor_2679,
Sus scrofa ENSSSCG00000007986 ortholog_one2many 2 retrogenes
retro_sscr_1113, retro_sscr_852,
Ictidomys tridecemlineatus ENSSTOG00000004798 ortholog_many2many 1 retrogene
retro_itri_1629,
Tursiops truncatus ENSTTRG00000009157 ortholog_one2many 2 retrogenes
retro_ttru_393, retro_ttru_688,
Vicugna pacos ENSVPAG00000010316 ortholog_one2many 1 retrogene
retro_vpac_150,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_71 89.25 94.90
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2. retro_cfam_447 73.83 54.08
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3. retro_cfam_1267 88.15 68.37
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4. retro_cfam_2209 73.47 97.96
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Download FASTA sequences of all ENSCAFG00000019677 retrocopies