RetrogeneDB ID: retro_mluc_388

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429886:3103754..3104318(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000008153
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: NME4
• Ensembl ID: ENSMLUG00000010061
• Aliases: None
• Description: Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:G1PF37]

Sequence

>retro_mluc_388
ATGAGCGGCCTCTTCGGGCGCGCCGCGCTGAGGGAGCTGTTGTGCGGCCCGCGGGCCCGGGGCCCCGGCCTGCTCGTGCG
CCCCAGCTCCGGGGAGCCCTCCTGGGCCCGGGAGCGGACCCTGGTGACCGTGAAGCCGGACGGGGTGCGGCGACGGCTGG
TGGGCGAGGTGATCCGGCGCTTTGAGAGGCGGGGCTTCCGGCTGGTGGGGATGAAGATGCTGCAGGCGCCGGAGAGCGTG
CTGGCCCAGCACTACGAGCGCCATCGCGAGGAGCCCTTCTACGCGGCCCTCCTCGGCCACATGCGCTCGGGCCCCGTGGT
GGCCATGGTCTGGGAAGGCCCGAGCGTGGTCCGCGCCTCCAGGGCCATGGTCGGGCTCACCGACGGGGCCGAGGCCGCCC
CCGGCACCATCCGAGGAGACTTCAGCCTCCACATCCGAAGGAACGTCGTCCACGCCAGCGACTCGGTGGAGGGGGCCCGG
AGGGAGATCCAGCTGTGGTTCCGGAGCAGCGAGCTGGTGGACTGGGCGGACGAGGGCCACCGCGGCAGCCTCGACCCCGC
CTGA

Alignment

ORF - retro_mluc_388 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.63 %
• Parental protein coverage: 92.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSGLLGRAVLREVVCGSRAWVPSLLVRPCSGGPSWTRERTLVAVKPDGVQRRLVGDVIRRFERRGFKLVG
          MSGL.GRA.LRE..CG.RA..P.LLVRP.SG.PSW.RERTLV.VKPDGV.RRLVG.VIRRFERRGF.LVG
Retrocopy MSGLFGRAALRELLCGPRARGPGLLVRPSSGEPSWARERTLVTVKPDGVRRRLVGEVIRRFERRGFRLVG

Parental  MKMIQAPESILAEHYHDLQRKPFYPALISYMSSGPVVAMVWEGPNVVCTSRAMIGHTDSAEAAPGTIRGD
          MKM.QAPES.LA.HY......PFY.AL...M.SGPVVAMVWEGP.VV..SRAM.G.TD.AEAAPGTIRGD
Retrocopy MKMLQAPESVLAQHYERHREEPFYAALLGHMRSGPVVAMVWEGPSVVRASRAMVGLTDGAEAAPGTIRGD

Parental  FSFHISRNIIHASDSVEGAQREIQLWFQSNELVDWADEGHRSSL
          FS.HI.RN..HASDSVEGA.REIQLWF.S.ELVDWADEGHR.SL
Retrocopy FSLHIRRNVVHASDSVEGARREIQLWFRSSELVDWADEGHRGSL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_388 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 22 parental genes, and 39 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000007077	3 retrocopies	retro_amel_1271, retro_amel_216, retro_amel_238,
Canis familiaris	ENSCAFG00000019677	4 retrocopies	retro_cfam_1267, retro_cfam_2209, retro_cfam_447, retro_cfam_71,
Cavia porcellus	ENSCPOG00000006496	1 retrocopy	retro_cpor_1076,
Echinops telfairi	ENSETEG00000014875	1 retrocopy	retro_etel_1833,
Felis catus	ENSFCAG00000008300	3 retrocopies	retro_fcat_1013, retro_fcat_1512, retro_fcat_1672,
Homo sapiens	ENSG00000103202	1 retrocopy	retro_hsap_1740,
Gorilla gorilla	ENSGGOG00000004512	1 retrocopy	retro_ggor_2259,
Macropus eugenii	ENSMEUG00000005455	5 retrocopies	retro_meug_1027, retro_meug_1427, retro_meug_1981, retro_meug_1999, retro_meug_694,
Myotis lucifugus	ENSMLUG00000010061	1 retrocopy	retro_mluc_388 ,
Myotis lucifugus	ENSMLUG00000016929	3 retrocopies	retro_mluc_1422, retro_mluc_1882, retro_mluc_637,
Macaca mulatta	ENSMMUG00000000612	1 retrocopy	retro_mmul_1221,
Mustela putorius furo	ENSMPUG00000016017	3 retrocopies	retro_mputfur_1024, retro_mputfur_1067, retro_mputfur_846,
Mus musculus	ENSMUSG00000024177	1 retrocopy	retro_mmus_309,
Nomascus leucogenys	ENSNLEG00000008068	1 retrocopy	retro_nleu_2719,
Otolemur garnettii	ENSOGAG00000025808	1 retrocopy	retro_ogar_2689,
Pongo abelii	ENSPPYG00000006908	1 retrocopy	retro_pabe_1442,
Pan troglodytes	ENSPTRG00000007541	1 retrocopy	retro_ptro_1220,
Rattus norvegicus	ENSRNOG00000049152	1 retrocopy	retro_rnor_2679,
Sus scrofa	ENSSSCG00000007986	2 retrocopies	retro_sscr_1113, retro_sscr_852,
Ictidomys tridecemlineatus	ENSSTOG00000004798	1 retrocopy	retro_itri_1629,
Tursiops truncatus	ENSTTRG00000009157	2 retrocopies	retro_ttru_393, retro_ttru_688,
Vicugna pacos	ENSVPAG00000010316	1 retrocopy	retro_vpac_150,