RetrogeneDB ID: | retro_fcat_496 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:94034862..94035215(-) | ||
Located in intron of: | ENSFCAG00000018337 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LAMTOR1 | ||
Ensembl ID: | ENSFCAG00000005320 | ||
Aliases: | None | ||
Description: | late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 [Source:HGNC Symbol;Acc:26068] |
Percent Identity: | 77.69 % |
Parental protein coverage: | 74.53 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SLPSTRTDEQALLSS-ILAKTASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPS |
SLPST..DEQALLS...LAK.ASNIIDVSA.DSQGM.QH.Y...AR.Y.T.LAVLSS.LTHWKKL.PLP. | |
Retrocopy | SLPSTHIDEQALLSP<MLAKGASNIIDVSATDSQGMKQHKYTSQAREYGTHLAVLSS-LTHWKKLLPLPC |
Parental | LTSQPHQVLASEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP |
LTSQ..QVLAS.PI.FSDLQ.VSRIAAYAYSALSQI..DAKEEL.V.FGIP | |
Retrocopy | LTSQS-QVLASKPISFSDLQRVSRIAAYAYSALSQIQADAKEELIV*FGIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .75 RPM |
SRP017611_liver | 0 .00 RPM | 12 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010854 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000005788 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010979 | 1 retrocopy | |
Felis catus | ENSFCAG00000005320 | 2 retrocopies |
retro_fcat_142, retro_fcat_496 ,
|
Macropus eugenii | ENSMEUG00000003560 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014117 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010289 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000014730 | 2 retrocopies |