RetrogeneDB ID: retro_mputfur_270

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896900.1:22622789..22623184(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LAMTOR1
• Ensembl ID: ENSMPUG00000010289
• Aliases: None
• Description: late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 [Source:HGNC Symbol;Acc:26068]

Sequence

>retro_mputfur_270
CCCCCGCCAAAGCCCTCAAAGGGGCAGAAGCCAACTCCCACAGCCTGCCTCCCACTTGTGCAGGTAGATGAGCAGGCCCT
GCTCTCCTCCAGCCTTGCTAAGACAGCCAACAACATCACTGACGTGTCTGCTGTGGACAGGGAGCATCACGAGTACATGG
ACAGGGCAAGGCAGTAGACACTTGCTTGGCTGTGCTGAGCAGCAGCCTGACCCACTGAAAGAAGCTGCCATGGCTTCCGT
CTCTCACCAGCCAGCCCCGCCAAGTGCTGGCCAGCTAGCCCATCCCCTCCCCAGACTCGCAGCAGGTCTCCAGGAGAGCT
GCTTATGCCTACAGTGCACTTTCTCAGATCCCTGTGGATGCAAAAGAGGAGCTGATTGTACAGTTTGGGTTTCCA

Alignment

ORF - retro_mputfur_270 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.59 %
• Parental protein coverage: 83.23 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PPTKALNGAEPNYHS-LPPTRTDEQALLSSILAKTASNIIDVSAADSQGMEQHEYMDRARQ-YSTRLAVL
          PP.K...G..P.....LP....DEQALLSS.LAKTA.NI.DVSA.D....E.HEYMDRARQ...T.LAVL
Retrocopy PPPKPSKGQKPTPTACLPLVQVDEQALLSSSLAKTANNITDVSAVDR---EHHEYMDRARQ<VDTCLAVL

Parental  SSSLTHWKKLPPLPSLTSQPHQVLASEPVPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP
          SSSLTH.KKLP.LPSLTSQP.QVLAS.P.P..D.QQVSR.AAYAYSALSQI.VDAKEEL.VQFG.P
Retrocopy SSSLTH*KKLPWLPSLTSQPRQVLAS*PIPSPDSQQVSRRAAYAYSALSQIPVDAKEELIVQFGFP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_270 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_270 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010854	2 retrocopies	retro_amel_1176, retro_amel_436,
Canis familiaris	ENSCAFG00000005788	1 retrocopy	retro_cfam_1962,
Echinops telfairi	ENSETEG00000010979	1 retrocopy	retro_etel_1005,
Felis catus	ENSFCAG00000005320	2 retrocopies	retro_fcat_142, retro_fcat_496,
Macropus eugenii	ENSMEUG00000003560	1 retrocopy	retro_meug_17,
Myotis lucifugus	ENSMLUG00000014117	1 retrocopy	retro_mluc_2372,
Mustela putorius furo	ENSMPUG00000010289	3 retrocopies	retro_mputfur_1178, retro_mputfur_270 , retro_mputfur_455,
Tarsius syrichta	ENSTSYG00000014730	2 retrocopies	retro_tsyr_1324, retro_tsyr_33,