RetrogeneDB ID: retro_mputfur_455

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896910.1:19597719..19597985(-)
• Located in intron of: ENSMPUG00000007071

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LAMTOR1
• Ensembl ID: ENSMPUG00000010289
• Aliases: None
• Description: late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 [Source:HGNC Symbol;Acc:26068]

Sequence

>retro_mputfur_455
GGGTGTTGCTACAGCGGCGAGAAGAGGGACATGAACCAGGACCTAGAGGAGCGGAAGCTGCTGCAGGACCCTAACGGCCC
CCTACCAAAGCCCTCAGTGGAGCTGAGCCCAACCACAGCTGGCCTTCCACTGGCTCGCACAGAAGAGGGGGCCCTGCTCT
CCCCCTGCCTTACTAAGACAGCAACAACATCACCAGAGCGTCTGCTGCAGACTGCCAGGGCATGGAGCAGCACAAGCACA
GGGACCCAGCACGGCAGGACAGCACC

Alignment

ORF - retro_mputfur_455 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.13 %
• Parental protein coverage: 55.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  GCCYSSENEDSDQDREERKLLLDPSS-PPTKALNGAEPNYH-SLPPTRTDEQALLSSILAKTA-SNIIDV
          GCCYS.E..D..QD.EERKLL.DP...PPTKAL.GAEPN....LP..RT.E.ALLS..L.KTA..NI...
Retrocopy GCCYSGEKRDMNQDLEERKLLQDPNG<PPTKALSGAEPNHS>GLPLARTEEGALLSPCLTKTA<NNITRA

Parental  SAADSQGMEQHEYMDRARQYST
          SAAD.QGMEQH...D.ARQ.ST
Retrocopy SAADCQGMEQHKHRDPARQDST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_455 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_455 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010854	2 retrocopies	retro_amel_1176, retro_amel_436,
Canis familiaris	ENSCAFG00000005788	1 retrocopy	retro_cfam_1962,
Echinops telfairi	ENSETEG00000010979	1 retrocopy	retro_etel_1005,
Felis catus	ENSFCAG00000005320	2 retrocopies	retro_fcat_142, retro_fcat_496,
Macropus eugenii	ENSMEUG00000003560	1 retrocopy	retro_meug_17,
Myotis lucifugus	ENSMLUG00000014117	1 retrocopy	retro_mluc_2372,
Mustela putorius furo	ENSMPUG00000010289	3 retrocopies	retro_mputfur_1178, retro_mputfur_270, retro_mputfur_455 ,
Tarsius syrichta	ENSTSYG00000014730	2 retrocopies	retro_tsyr_1324, retro_tsyr_33,