RetrogeneDB ID: retro_fcat_667

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B1:164377441..164378263(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSFCAG00000026490
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MTFR1L
• Ensembl ID: ENSFCAG00000012794
• Aliases: None
• Description: mitochondrial fission regulator 1-like [Source:HGNC Symbol;Acc:28836]

Sequence

>retro_fcat_667
CTGCCCAGTAGCTGCCTCGCTCTTCAAGTGCAGGAGCCAGTTGAAATATCAGGAATGGAAGCCAATGTGACCATCCCAAT
CTGGCAAAACAAGCCACATGGGTCTACTCAAAGTGTAGTGAGAAAAACTGGGACCAACCTGCCCCCTGAAGCCATGTCCC
TGGGCATCCTTTGAAACCCCATACCCAACATGTCTGACCTGCGTCTAAAGGATGTGCCCCCCATCCCTGCTCTGGCCGAC
ACTGCCTGGAATGCTGTGATGAAGAGGAGATATATGTCCGGGTCAGGAGTGACACGTGGCTCCTGAGGCACACCTGGAAG
CCTAGCCCTCTAACTGTCACACAGCACAATGCCTCAGTGCCCAACCTGCGTGGGTCCAAGGTGACCATCTTTCTGACCAT
TCCAGCACTGTCAGCCCTAAGTCGCACCGCAGTGCTGCAGGATGAGCTGAACTACCTGCATGGCCAGATTGCCAAGATAG
CGGCATCTGATACACCTTCGGTTTCATTAACAACAGATTTCTTATCTCCAGGAAGTTCAAATGTCTCTCCTCCCTTACCT
GGTTTTGGATCCTCACTGCACTGTACAACTTCCTTTGCCATTAGTGGCATCACCAAGGAGACCAAGGTAGAGGTCCCTGA
GCTACCATTAGCCCCCCCCTGCTCTGTTCTGCCAGCCCTGAAGGCTGCAAACCACAACACAAAGCAACCACAGCTCGTCT
GAAGAGGATGACTGTGTCTCTCTGTCCAAGGCCAGCAGCTCTGCAGACATCATGGGGATCCTGGAGGACTTTCACCAGAT
GGAACAGAGCCTAGATCTAGCT

Alignment

ORF - retro_fcat_667 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.07 %
• Parental protein coverage: 88.67 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  LPRSCLVLQAQEPVEMSAMEANVTIPIWQNKPHGAARSVVRRIGTNL-PLKPCPRASFQT-LPNISDLCL
          LP.SCL.LQ.QEPVE.S.MEANVTIPIWQNKPHG...SVVR..GTNL.PLKPCP.ASF.T..P.......
Retrocopy LPSSCLALQVQEPVEISGMEANVTIPIWQNKPHGSTQSVVRKTGTNL>PLKPCPWASFETPYPTCLTCV*

Parental  RDVPP-VPTLADIAWIA-ADEEETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPA
          R..PP..P.LAD.AW.A..DEEE.Y.RVRSDT..LRHTWKPSPL.V.Q.NASVPNLRGS......L..PA
Retrocopy RMCPP<IPALADTAWNA<CDEEEIYVRVRSDTWLLRHTWKPSPLTVTQHNASVPNLRGSKVTIF-LTIPA

Parental  LPALSRTTELQDELSHLRSQIAKIVAADAASASLTPDFLSPGSSNVSSPLPCFGSSFHSTTSFVISDITE
          L.ALSRT..LQDEL..L..QIAKI.A.D..S.SLT.DFLSPGSSNVS.PLP.FGSS.H.TTSF.IS.IT.
Retrocopy LSALSRTAVLQDELNYLHGQIAKIAASDTPSVSLTTDFLSPGSSNVSPPLPGFGSSLHCTTSFAISGITK

Parental  ETEVEVPELPSVPLLCSASPECCKPEHKA-TCSSSEE-DDCVSLSKASSFADMMGILKDFHRMKQSQDLS
          ET.VEVPELP.....CS..P......H......SS.E.DDCVSLSKASS.AD.MGIL.DFH.M.QS.DL.
Retrocopy ETKVEVPELP-LXXXCSVLPALKAANHNT>SNHSSSEEDDCVSLSKASSSADIMGILEDFHQMEQSLDLA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	25.59 RPM
SRP017611_kidney	0.00 RPM	22.47 RPM
SRP017611_liver	0.00 RPM	12.03 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_667 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_667 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000012794	1 retrocopy	retro_fcat_667 ,
Macropus eugenii	ENSMEUG00000016175	4 retrocopies	retro_meug_1948, retro_meug_2133, retro_meug_359, retro_meug_557,
Myotis lucifugus	ENSMLUG00000010738	1 retrocopy	retro_mluc_338,
Tursiops truncatus	ENSTTRG00000012479	2 retrocopies	retro_ttru_1262, retro_ttru_327,
Vicugna pacos	ENSVPAG00000004314	1 retrocopy	retro_vpac_458,