RetrogeneDB ID: retro_ttru_327

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_1874:329174..329660(-)
• Located in intron of: ENSTTRG00000011581

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MTFR1L
• Ensembl ID: ENSTTRG00000012479
• Aliases: None
• Description: mitochondrial fission regulator 1-like [Source:HGNC Symbol;Acc:28836]

Sequence

>retro_ttru_327
GTGACCATCCCAATCTGGCAAAACAAGCCGCGTGGGGCTGCTCAAAGTATAGTGAGAAGAATCGGGACCAACCTGCCCCT
GAAGCCATGTCCCCGGGCATCCTTTGAGACCCTGCCCAACATCTCTGACCTGTGTCTGAGGCATGTACTGCCAGTCCCTA
CTCTGGCTGACATCGTCTGGATTCCTGCAGATGTAGAGGAGACTTATGTCCTGGTCAGGAGTGATACACGCCCCCTGAGG
CACACCTGCAAGCCCAGCCCTCTGATCGTCATTCAGCGCAATGCCTCAGTGCCCAAACTGCGTGGGTCGGAGGAGAGGCT
TCTGGCCTTGAAGAAGCCAGCCCTGCCAGCCCTTGGCTGCACCAAAGAGCTGCAGGATGAGCTGAGCCACCTGAGCAGCC
AGATTGCTAAAATGGTGTCAGCTGATGCAGGAAGTTCAAATGTCTCTTCTCCCTTACCTTGTTTTGGATCCTCATTCTAC
TCTACA

Alignment

ORF - retro_ttru_327 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.4 %
• Parental protein coverage: 54.73 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LTIPIWQNKPHGAARSVVRRIGTNLPLKPCPRASFETLPNISDLCLRDVPPVPTLADIAWIAADEEETYA
          .TIPIWQNKP.GAA.S.VRRIGTNLPLKPCPRASFETLPNISDLCLR.V.PVPTLADI.WI.AD.EETY.
Retrocopy VTIPIWQNKPRGAAQSIVRRIGTNLPLKPCPRASFETLPNISDLCLRHVLPVPTLADIVWIPADVEETYV

Parental  RVRYDTRPLRHTWKPSPLIVIQRNASVPNLRGSEERLLALKKPALPALSRTTELQEELSHLRSQIAKIVA
          .VR.DTRPLRHT.KPSPLIVIQRNASVP.LRGSEERLLALKKPALPAL..T.ELQ.ELSHL.SQIAK.V.
Retrocopy LVRSDTRPLRHTCKPSPLIVIQRNASVPKLRGSEERLLALKKPALPALGCTKELQDELSHLSSQIAKMVS

Parental  ADAASASLTPDFLSPGSSNVSS
          ADA.S..........GSS..S.
Retrocopy ADAGSSNVSSPLPCFGSSFYST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_327 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_327 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000012794	1 retrocopy	retro_fcat_667,
Macropus eugenii	ENSMEUG00000016175	4 retrocopies	retro_meug_1948, retro_meug_2133, retro_meug_359, retro_meug_557,
Myotis lucifugus	ENSMLUG00000010738	1 retrocopy	retro_mluc_338,
Tursiops truncatus	ENSTTRG00000012479	2 retrocopies	retro_ttru_1262, retro_ttru_327 ,
Vicugna pacos	ENSVPAG00000004314	1 retrocopy	retro_vpac_458,