RetrogeneDB ID: retro_fcat_683

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B2:11786084..11786336(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACBD7
• Ensembl ID: ENSFCAG00000027337
• Aliases: None
• Description: acyl-CoA binding domain containing 7 [Source:HGNC Symbol;Acc:17715]

Sequence

>retro_fcat_683
GCTGAGTTTGACAAAGCTGCTGAGGATGTTTAAGCACCTCAAGACCAAGCCAGCAGATGATGAGATGTTGTTCATCTACG
GCCACTACAAACAAGCAACTGTGGGGGACATAAACACAGAACGGCCCGACTGCTAGATCTCAAAGGCAAGGCCAAGTGGG
ATGTCTGGAATCAGCTGAAAGGGACTTCCAAGGAAGATGCCATGAAAGCTTACATCAACAAAGTAGAAGAGCTAAAGAAA
AAATATGGAATA

Alignment

ORF - retro_fcat_683 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.79 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ADFDRIAEDV-KKMKTRPNDGELKELYGLYKQSVVGDINIECPG-ILDLKGKAKWEAWNLQKGLSKEDAM
          A.FD..AEDV.K..KT.P.D.E....YG.YKQ..VGDIN.E.P...LDLKGKAKW..WN..KG.SKEDAM
Retrocopy AEFDKAAEDV>KHLKTKPADDEMLFIYGHYKQATVGDINTERPD<LLDLKGKAKWDVWNQLKGTSKEDAM

Parental  SAYIAKAKELIEKYGI
          .AYI.K..EL..KYGI
Retrocopy KAYINKVEELKKKYGI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	4.48 RPM	0.11 RPM
SRP017611_kidney	15.36 RPM	0.31 RPM
SRP017611_liver	4.65 RPM	2.02 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_683 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_683 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000009249	1 retrocopy	retro_cjac_1017,
Felis catus	ENSFCAG00000027337	1 retrocopy	retro_fcat_683 ,
Homo sapiens	ENSG00000176244	2 retrocopies	retro_hsap_1501, retro_hsap_1669,
Gorilla gorilla	ENSGGOG00000015777	3 retrocopies	retro_ggor_1152, retro_ggor_1257, retro_ggor_625,
Macaca mulatta	ENSMMUG00000010587	2 retrocopies	retro_mmul_1577, retro_mmul_2141,
Nomascus leucogenys	ENSNLEG00000012353	2 retrocopies	retro_nleu_1147, retro_nleu_1720,
Pongo abelii	ENSPPYG00000002111	2 retrocopies	retro_pabe_1252, retro_pabe_1376,
Pan troglodytes	ENSPTRG00000041316	3 retrocopies	retro_ptro_1018, retro_ptro_1132, retro_ptro_530,
Pteropus vampyrus	ENSPVAG00000007153	1 retrocopy	retro_pvam_649,