RetrogeneDB ID: retro_ggor_1312

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 17:74934722..74934964(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COX19
• Ensembl ID: ENSGGOG00000034907
• Aliases: None
• Description: None

Sequence

>retro_ggor_1312
ATGTCCACAGCCATAAATCTTAGGACCAAGATCTTCCAGGCATGGCCCCTGGACAAGGGCAGCTTCCCGCTGAAACTTTT
CAATAAATATGAAAGCTTAAAGAGAAATTTATGAAGTGCCTTCATGATAATAGAAGTGAAAATATTTTGCAGAAGAATAA
ATCAAAAGCATATTCAGAATGCAGAATGGAGAGACAACAAAAGGTGTAAAAACCAAGAGGAACACTAGGATTTGGAGATT
TG

Alignment

ORF - retro_ggor_1312 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.54 %
• Parental protein coverage: 90.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSTAMNFGTKSFQPRPPDKGSFPLDHLGECKSF-KEKFMKCLHNNNFENALCRNESKEYLECRMERKLML
          MSTA.N..TK.FQ..P.DKGSFPL.......S..KEKFMKCLH.N..EN.L..N.SK.Y.ECRMER....
Retrocopy MSTAINLRTKIFQAWPLDKGSFPLKLFNKYESL<KEKFMKCLHDNRSENILQKNKSKAYSECRMERQQKV

Parental  QEPLEKLGFGDL
          ..P...LGFGDL
Retrocopy *KPRGTLGFGDL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.72 RPM
SRP007412_cerebellum	0.00 RPM	1.50 RPM
SRP007412_heart	0.00 RPM	0.47 RPM
SRP007412_kidney	0.00 RPM	1.92 RPM
SRP007412_liver	0.00 RPM	2.82 RPM
SRP007412_testis	0.00 RPM	2.28 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1312 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1312 has 3 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_3300
Pan troglodytes	retro_ptro_2168
Macaca mulatta	retro_mmul_2067

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000015253	1 retrocopy	retro_btau_671,
Homo sapiens	ENSG00000240230	1 retrocopy	retro_hsap_3300,
Gorilla gorilla	ENSGGOG00000034907	1 retrocopy	retro_ggor_1312 ,
Macaca mulatta	ENSMMUG00000007202	1 retrocopy	retro_mmul_2067,
Pan troglodytes	ENSPTRG00000041621	1 retrocopy	retro_ptro_2168,
Pteropus vampyrus	ENSPVAG00000002192	1 retrocopy	retro_pvam_409,
Tursiops truncatus	ENSTTRG00000011489	2 retrocopies	retro_ttru_1140, retro_ttru_1270,