RetrogeneDB ID: | retro_ggor_1401 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 18:18799662..18800038(-) | ||
Located in intron of: | ENSGGOG00000012718 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSGGOG00000007650 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.69 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LFRGRCLQALRMVQRLTYRRRLSYNTASNKTRLSRT-PGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRA |
LF.G..L.AL.M.Q.L....RL.YNTASNKTRLS.T.PG..IVYLY.KKVGKAP.SACGVCPGRL.G..A | |
Retrocopy | LFQGCYLEALSMIQCLMHHHRLFYNTASNKTRLSQT<PG--IVYLYIKKVGKAPMSACGVCPGRLQGIYA |
Parental | VRPKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFL-IEEQKIVVKVLKAQAQSQKAK |
VRP.VL.RLSK..K.VS...G.SM.AKC..DR.K.AFL...EQ...VK.LKAQAQSQKAK | |
Retrocopy | VRPQVLVRLSKILKSVSTTNGVSMTAKCIHDRTKHAFL<FKEQNVIVKMLKAQAQSQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 67 .14 RPM |
SRP007412_cerebellum | 0 .04 RPM | 96 .60 RPM |
SRP007412_heart | 0 .03 RPM | 42 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 227 .51 RPM |
SRP007412_liver | 0 .00 RPM | 244 .87 RPM |
SRP007412_testis | 0 .21 RPM | 93 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1921 |
Pan troglodytes | retro_ptro_1285 |
Pongo abelii | retro_pabe_1609 |