RetrogeneDB ID: | retro_ggor_2744 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 8:92836286..92836667(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSGGOG00000007650 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.19 % |
Parental protein coverage: | 99.22 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | FRGRCLQALRMVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR |
F.G.CLQALR.VQ.L...RRLSYNTASNKTRLS.TPGNRIVYLYTKK.GKAPKSACGV.PG.LRGVRAVR | |
Retrocopy | FGGHCLQALRIVQHLA*QRRLSYNTASNKTRLS*TPGNRIVYLYTKKFGKAPKSACGVYPGQLRGVRAVR |
Parental | PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK |
PKVLMRLSKTKKHVSR.YGGSMCAKCVRDR.KRAFLI.EQKIVVKVLKA.AQSQKAK | |
Retrocopy | PKVLMRLSKTKKHVSRVYGGSMCAKCVRDRVKRAFLIKEQKIVVKVLKA*AQSQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 67 .14 RPM |
SRP007412_cerebellum | 0 .04 RPM | 96 .60 RPM |
SRP007412_heart | 0 .09 RPM | 42 .96 RPM |
SRP007412_kidney | 0 .37 RPM | 227 .51 RPM |
SRP007412_liver | 0 .13 RPM | 244 .87 RPM |
SRP007412_testis | 0 .00 RPM | 93 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4091 |
Pan troglodytes | retro_ptro_2775 |
Pongo abelii | retro_pabe_3352 |