RetrogeneDB ID: | retro_ggor_1531 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 20:21430976..21431494(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS11 | ||
Ensembl ID: | ENSGGOG00000015152 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.11 % |
Parental protein coverage: | 88.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RVVARTPAGTICTGARQLQDAAAKQKVEQN-AAPSHTKFSIYPPIPGEESSLRWAGKKFEEIPIAHIKAS |
RV.AR....TI.TG...LQD..AKQ..E....APS.T.FSIYPPI..E.SSLRWAGKKFEEIPIAHI.AS | |
Retrocopy | RVMARMLVQTIHTGTQKLQDIEAKQNIEEKMVAPSYTSFSIYPPITKEKSSLRWAGKKFEEIPIAHIRAS |
Parental | HNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSA |
.NNTQIQV.SA.N.PLA..SCGTE.F.NAKKGTGI.AQTAGIAA...A..KGV.H..VVVKG.GPG.LSA | |
Retrocopy | YNNTQIQVISATNQPLAHTSCGTEEFLNAKKGTGIDAQTAGIAAMTKAAGKGVTHT*VVVKGQGPGHLSA |
Parental | MHGLIMGGLEVISIT-DNTPIPHNGCRPRKARKL |
..GL.MGGLEVISIT..NTPIPHNG..P.KA..L | |
Retrocopy | IQGLTMGGLEVISIT<NNTPIPHNGSCPQKAPRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 23 .55 RPM |
SRP007412_cerebellum | 0 .00 RPM | 16 .86 RPM |
SRP007412_heart | 0 .00 RPM | 14 .60 RPM |
SRP007412_kidney | 0 .00 RPM | 21 .79 RPM |
SRP007412_liver | 0 .00 RPM | 12 .95 RPM |
SRP007412_testis | 0 .00 RPM | 25 .17 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2458 |
Pan troglodytes | retro_ptro_1419 |
Macaca mulatta | retro_mmul_637 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000013012 | 2 retrocopies | |
Felis catus | ENSFCAG00000014967 | 1 retrocopy | |
Homo sapiens | ENSG00000181991 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015152 | 1 retrocopy |
retro_ggor_1531 ,
|
Macaca mulatta | ENSMMUG00000013659 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011441 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008247 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006751 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007420 | 1 retrocopy |