RetrogeneDB ID: | retro_ggor_1632 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2a:34235808..34236050(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V0E1 | ||
Ensembl ID: | ENSGGOG00000006701 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILA-QLNPLFGPQLK |
MAY.GLT.PLI.MSVF.GF.GF..PWFIPKGPN.GVIITMLVTCSVCC.LFWLIAILA.QLNPLF..QLK | |
Retrocopy | MAYQGLTIPLIAMSVF*GFTGFFMPWFIPKGPN*GVIITMLVTCSVCCCLFWLIAILA<QLNPLFRLQLK |
Parental | NETIWYLKYHWP |
.E.IWY.K.HWP | |
Retrocopy | HEIIWYPKCHWP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 13 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 14 .89 RPM |
SRP007412_heart | 0 .00 RPM | 20 .08 RPM |
SRP007412_kidney | 0 .04 RPM | 135 .34 RPM |
SRP007412_liver | 0 .00 RPM | 75 .28 RPM |
SRP007412_testis | 0 .00 RPM | 48 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2090 |
Pan troglodytes | retro_ptro_1537 |
Pongo abelii | retro_pabe_2006 |
Macaca mulatta | retro_mmul_983 |
Callithrix jacchus | retro_cjac_1296 |