RetrogeneDB ID: | retro_ggor_2948 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:113344402..113345341(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AKR1B1 | ||
Ensembl ID: | ENSGGOG00000011731 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 0 |
Parental | MASRLLLNNGAKMPILGLGTWKSPPGQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKR |
M...LLLN..AKM.ILG.GTWKSPP..VTE.V.V.I..GY.HIDCAHVY.NENE.GVAI.EKLREQ.VK. | |
Retrocopy | MNNHLLLNKSAKMSILGPGTWKSPPDLVTESVNVVINIGYCHIDCAHVY*NENESGVAI*EKLREQAVKC |
Parental | EELFIVSKLWCTYHEKGLVKGACQKTLSDLKLDYLDLYLIHWPTGFKPGKEFFPLDESGSVVPSDTNILD |
..LFI.S.LWCTY..KGL.K..CQK.LS.L.LDYLD.YLIHW..GFKPGK.FFPLD.S..V.P.DT.I.D | |
Retrocopy | K*LFIISNLWCTYLKKGLLKKTCQKMLSYLNLDYLDIYLIHWTAGFKPGKKFFPLDDSATVYPNDTSIVD |
Parental | TWAAMEELVDEGLVKAIGISNFNHLQVETILNKPGLKYKPAVNQIECHPYLTQEKLIQYCQSKGIVVTAY |
T.AAM.ELVDE.LVKAIGISNFN...V..ILNK.GLKY.P.V.QIE...YLTQ.KLIQYCQSKGI.VTAY | |
Retrocopy | T*AAMKELVDEALVKAIGISNFNYSHVRRILNKRGLKYQPMVKQIEFYTYLTQKKLIQYCQSKGIMVTAY |
Parental | SPLGSPDRPWAKPEDPSLLEDPRIKAIAAKHNKTTAQVLIRFPMQRNLVVIPKSVTPERIAENFKVFDFE |
SPL.S.DRPWAK..D.S.LED.R.K.I..KHNKTTAQVLI.FP.QRNLVV.PKSVT...IAENFK.F.FE | |
Retrocopy | SPLDSLDRPWAKLKDSSVLEDARSKVITVKHNKTTAQVLI*FPIQRNLVVNPKSVTQKCIAENFKAFYFE |
Parental | LSSQDMTTLLSYNRNWRVCALLSCTSHKDYPFHEEF |
LSS.DMTTL.SYNRN...C.L.SCTSHKDYPF.EEF | |
Retrocopy | LSSKDMTTLPSYNRN---CGLVSCTSHKDYPF*EEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 67 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 54 .33 RPM |
SRP007412_heart | 0 .00 RPM | 205 .85 RPM |
SRP007412_kidney | 0 .00 RPM | 30 .83 RPM |
SRP007412_liver | 0 .00 RPM | 13 .56 RPM |
SRP007412_testis | 0 .00 RPM | 64 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4745 |
Pan troglodytes | retro_ptro_3160 |
Pongo abelii | retro_pabe_3691 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009902 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000001290 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012231 | 14 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011358 | 2 retrocopies | |
Homo sapiens | ENSG00000085662 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000011731 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000014684 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003434 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000001921 | 2 retrocopies | |
Mus musculus | ENSMUSG00000001642 | 10 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013037 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000016156 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000016195 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018017 | 8 retrocopies | |
Pan troglodytes | ENSPTRG00000019716 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000009513 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013327 | 1 retrocopy |