Parental gene:

DKFZP468E1617, ENSPPYG00000018017

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:7:131544167..131561041(-)


>ENSPPYG00000018017
ATGGCCAGCCATCTCGTGCTCAACAATGGCGCCAAGATGCCCATCCTGGGGCTGGGTACCTGGAAGTCCCCTCCAGGGCA
GGTTACTGAGGCCGTGAAGGTGGCCATTGACGTCGGGTACCGCCACATCGACTGTGCCCATGTGTACCAGAATGAGAATG
AGGTGGGGGTGGCCATTCAGGAGAAGCTCAGGGAGCAGGTGGTGAAGCGTGAGGAGCTCTTCATCGTCAGCAAGCTGTGG
TGCACGTACCATGAGAAGGGCCTGGTGAAAGGAGCCTGCCAGAAGACACTCAGCGACCTGAAGCTGGACTACCTGGACCT
CTACCTTATTCACTGGCCGACTGGCTTTAAGCCTGGGAAGGAATTTTTCCCACTGGATGAGTCAGGCAGTGTGGTTCCCA
GTGACACCAACATTCTGGACACGTGGGCGGCCATGGAAGAGCTGGTGGATGAAGGGCTGGTGAAAGCTATTGGCATCTCC
AACTTCAACCATCTCCAGGTGGAGACGATCTTAAACAAACCTGGCTTAAAGTATAATCCTGCAGTTAACCAGATTGAGTG
CCACCCATATCTCACTCAGGAGAAGTTAATCCAGTACTGCCAGTCCAAAGGCATCGTGGTGACCGCCTACAGCCCCCTCG
GCTCTCCTGACAGGCCCTGGGCCAAGCCCGAGGACCCTTCCCTCCTGGAGGATCCCAGGATCAAAGCGATCGCAGCCAAG
CACAATAAAACTACAGCCCAGGTCCTGATCCGGTTCCCCATGCAGAGGAACTTGGTGGTGATCCCCAAGTCTGTGACACC
AGAACGCATTGCTGAGAACTTTAAGGTCTTTGATTTTGAACTGAGCAGCCAGGATATGACCACCTTACTCAGCTACAACA
GGAACTGGAGGGTCTGTGCCTTGTTGAGCTGTACTTCCCACAAGGATTACCCCTTCCATGAAGAGTTTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 60 .99 RPM
SRP007412_cerebellum 66 .88 RPM
SRP007412_heart 14 .45 RPM
SRP007412_kidney 20 .05 RPM
SRP007412_liver 8 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009902 ortholog_one2many 3 retrogenes
retro_btau_1092, retro_btau_1642, retro_btau_821,
Canis familiaris ENSCAFG00000001290 ortholog_one2many 1 retrogene
retro_cfam_63,
Callithrix jacchus ENSCJAG00000012231 ortholog_one2many 14 retrogenes
retro_cjac_1140, retro_cjac_1167, retro_cjac_1718, retro_cjac_1973, retro_cjac_2550, retro_cjac_3102, retro_cjac_3143, retro_cjac_3297, retro_cjac_3692, retro_cjac_3840, retro_cjac_3872, retro_cjac_3910, retro_cjac_476, retro_cjac_621,
Dasypus novemcinctus ENSDNOG00000011358 ortholog_one2one 2 retrogenes
retro_dnov_2214, retro_dnov_721,
Homo sapiens ENSG00000085662 ortholog_one2one 7 retrogenes
retro_hsap_1261, retro_hsap_1422, retro_hsap_2049, retro_hsap_2663, retro_hsap_312, retro_hsap_4745, retro_hsap_851,
Gorilla gorilla ENSGGOG00000011731 ortholog_one2one 6 retrogenes
retro_ggor_1477, retro_ggor_1859, retro_ggor_2948, retro_ggor_343, retro_ggor_695, retro_ggor_991,
Macropus eugenii ENSMEUG00000003434 ortholog_one2one 6 retrogenes
retro_meug_1455, retro_meug_1505, retro_meug_1811, retro_meug_1980, retro_meug_486, retro_meug_504,
Microcebus murinus ENSMICG00000001921 ortholog_one2one 2 retrogenes
retro_mmur_1087, retro_mmur_66,
Mus musculus ENSMUSG00000001642 ortholog_one2one 10 retrogenes
retro_mmus_1252, retro_mmus_2082, retro_mmus_2678, retro_mmus_3242, retro_mmus_3488, retro_mmus_444, retro_mmus_534, retro_mmus_764, retro_mmus_784, retro_mmus_920,
Nomascus leucogenys ENSNLEG00000013037 ortholog_one2one 7 retrogenes
retro_nleu_1246, retro_nleu_1533, retro_nleu_2099, retro_nleu_2569, retro_nleu_2570, retro_nleu_418, retro_nleu_419,
Otolemur garnettii ENSOGAG00000016156 ortholog_one2one 2 retrogenes
retro_ogar_1282, retro_ogar_808,
Procavia capensis ENSPCAG00000016195 ortholog_one2one 1 retrogene
retro_pcap_428,
Pongo abelii ENSPPYG00000018018 within_species_paralog 1 retrogene
retro_pabe_606,
Pongo abelii ENSPPYG00000018037 other_paralog 1 retrogene
retro_pabe_406,
Pan troglodytes ENSPTRG00000019716 ortholog_one2one 6 retrogenes
retro_ptro_1365, retro_ptro_1794, retro_ptro_254, retro_ptro_3040, retro_ptro_3160, retro_ptro_972,
Rattus norvegicus ENSRNOG00000009513 ortholog_one2many 1 retrogene
retro_rnor_1438,
Tupaia belangeri ENSTBEG00000013327 ortholog_one2one 1 retrogene
retro_tbel_3093,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_370 87.58 99.37
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2. retro_pabe_694 88.27 62.03
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3. retro_pabe_1050 76.65 52.53
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4. retro_pabe_1089 75.00 52.53
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5. retro_pabe_1176 78.06 61.71
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6. retro_pabe_1672 88.68 100.00
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7. retro_pabe_2411 81.60 51.27
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8. retro_pabe_3691 70.89 100.00
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Download FASTA sequences of all ENSPPYG00000018017 retrocopies