RetrogeneDB ID: | retro_meug_1980 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold76308:7831..8244(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AKR1B1 | ||
Ensembl ID: | ENSMEUG00000003434 | ||
Aliases: | None | ||
Description: | aldo-keto reductase family 1, member B1 (aldose reductase) [Source:HGNC Symbol;Acc:381] |
Percent Identity: | 89.93 % |
Parental protein coverage: | 50.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FLDTWTAMEELVDAGLVKAIGISNFNHDQIEKLLTKPGLKYQPAVNQIECHPYLTQEKLIEYCQSKGIVV |
FLDTWTAMEE.VDAGLVKAIGISNFNHDQIEKLLTKPGLKY.PAVNQIEC.P.LTQEKLI.YCQSKGIVV | |
Retrocopy | FLDTWTAMEEVVDAGLVKAIGISNFNHDQIEKLLTKPGLKYKPAVNQIECYPNLTQEKLIKYCQSKGIVV |
Parental | TAYSPLGSPDRPWAKPEDPSLLNDPRIQAIAAKHQKTTAQVLIRFHIQRK-VVVIPKSITPSRIAENFQ |
T.Y.PLGSPD.PWAKPEDPSLLNDPRIQAIAAKHQKTTAQVLIRFHIQRK.V..IPKSI..SRIA.NFQ | |
Retrocopy | TTYRPLGSPDWPWAKPEDPSLLNDPRIQAIAAKHQKTTAQVLIRFHIQRK<VIEIPKSIIHSRIAKNFQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009902 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000001290 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012231 | 14 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011358 | 2 retrocopies | |
Homo sapiens | ENSG00000085662 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000011731 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000003434 | 6 retrocopies |
retro_meug_1455, retro_meug_1505, retro_meug_1811, retro_meug_1980 , retro_meug_486, retro_meug_504,
|
Macropus eugenii | ENSMEUG00000007370 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001921 | 2 retrocopies | |
Mus musculus | ENSMUSG00000001642 | 10 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013037 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000016156 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000016195 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018017 | 8 retrocopies | |
Pan troglodytes | ENSPTRG00000019716 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000009513 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013327 | 1 retrocopy |