RetrogeneDB ID: | retro_ggor_678 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:121054580..121055246(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5F1 | ||
Ensembl ID: | ENSGGOG00000005215 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.58 % |
Parental protein coverage: | 85.94 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLAPVPPLPE--YGGKVRYGLIPEEFFQFLY |
MLS.V.LSA.AT.APSL.NA.FLGPGVLQATRTFHTGQP.LAP.PPLP...Y.GKVR.GLIPEEFFQFLY | |
Retrocopy | MLSWVALSATATVAPSL*NAVFLGPGVLQATRTFHTGQPLLAPLPPLPSFSYRGKVRFGLIPEEFFQFLY |
Parental | PKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFVADFADKLNEQKLAQLEEA |
PKT.VTGPYVL..GLILYALSKEIY.I..ETF...S..G..VY.I.KYG......A..LNEQ..AQLEE. | |
Retrocopy | PKTSVTGPYVLQSGLILYALSKEIYMITPETFSTISIVGLLVYVI*KYGASIG*SAYQLNEQNIAQLEEV |
Parental | KQASIQHIQNAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHISVQNMMR |
KQASI..IQ.AID.EKSQ..LVQKRHYLFDVQRNNIAMA.EVTY.E.L.RVYKEVKNR.DYHISVQNMMR | |
Retrocopy | KQASIKQIQDAIDLEKSQRSLVQKRHYLFDVQRNNIAMAVEVTYWE*LHRVYKEVKNRPDYHISVQNMMR |
Parental | RKEQEHMINWVE |
.KEQEHMINWV. | |
Retrocopy | *KEQEHMINWVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .58 RPM | 56 .54 RPM |
SRP007412_cerebellum | 0 .91 RPM | 41 .64 RPM |
SRP007412_heart | 0 .00 RPM | 50 .78 RPM |
SRP007412_kidney | 2 .49 RPM | 103 .29 RPM |
SRP007412_liver | 0 .34 RPM | 52 .28 RPM |
SRP007412_testis | 0 .41 RPM | 110 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_828 |
Pan troglodytes | retro_ptro_578 |
Macaca mulatta | retro_mmul_1086 |