RetrogeneDB ID: | retro_hsap_4834 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:51424981..51425536(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000227997 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CENPV | ||
Ensembl ID: | ENSG00000166582 | ||
Aliases: | CENPV, 3110013H01Rik, CENP-V, PRR6, p30 | ||
Description: | centromere protein V [Source:HGNC Symbol;Acc:29920] |
Percent Identity: | 63.78 % |
Parental protein coverage: | 67.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PPPPPPTPATPTSSASNLDLGEQRERWETFQKRQKLTSEGAAKLLLDTFEYQGLVKHTGGCHCGAVRFEV |
P..P.P.P..P..S...LDLG.QRERWETF.K...L..EGAAK.LLDTFEY.GLV.HTGGCHCGAVRF.V | |
Retrocopy | PSAPTPYPPGPAPSPKDLDLGAQRERWETFRKLRGLSCEGAAKVLLDTFEYPGLVHHTGGCHCGAVRFAV |
Parental | WASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAEHITTYTFNTHKAQHTFCKRCGVQSFYTPRSNP |
WA.ADL...DC.C..C.KKQ.RHF.VPASRF.LL.GAE.I.TY..NTH.A.H.FC.RCGVQSF....S.P | |
Retrocopy | WAPADLRVVDCSCRLCRKKQHRHFLVPASRFTLLQGAESIVTYRSNTHPALHSFCSRCGVQSFHAAVSDP |
Parental | GGFGIAPHCLDEGTVRSMVTEEFNGSD-WEKAMKEHKTIKNMSKE |
...G.APHCLDEGTVRS.V.EE..G.D..E.A..EHK.I...S.. | |
Retrocopy | RVYGVAPHCLDEGTVRSVVIEEVGGGDPGEEAAEEHKAIHKTSSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 6 .62 RPM |
bodymap2_adrenal | 0 .00 RPM | 10 .97 RPM |
bodymap2_brain | 0 .00 RPM | 10 .20 RPM |
bodymap2_breast | 0 .00 RPM | 5 .82 RPM |
bodymap2_colon | 0 .00 RPM | 6 .32 RPM |
bodymap2_heart | 0 .00 RPM | 2 .97 RPM |
bodymap2_kidney | 0 .00 RPM | 7 .36 RPM |
bodymap2_liver | 0 .00 RPM | 11 .74 RPM |
bodymap2_lung | 0 .00 RPM | 6 .00 RPM |
bodymap2_lymph_node | 0 .00 RPM | 3 .58 RPM |
bodymap2_ovary | 0 .00 RPM | 17 .12 RPM |
bodymap2_prostate | 0 .00 RPM | 8 .90 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 6 .07 RPM |
bodymap2_testis | 0 .00 RPM | 19 .95 RPM |
bodymap2_thyroid | 0 .00 RPM | 8 .46 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 2 .19 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004716 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000018019 | 2 retrocopies | |
Homo sapiens | ENSG00000166582 | 3 retrocopies |
retro_hsap_4683, retro_hsap_4833, retro_hsap_4834 ,
|
Macropus eugenii | ENSMEUG00000002027 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007166 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010146 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014726 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000029365 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008810 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012221 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |