RetrogeneDB ID: | retro_itri_1228 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393408.1:2388235..2388471(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM50A | ||
Ensembl ID: | ENSSTOG00000022246 | ||
Aliases: | None | ||
Description: | transmembrane protein 50A [Source:HGNC Symbol;Acc:30590] |
Percent Identity: | 53.01 % |
Parental protein coverage: | 51.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | WWIIIDAAVMYPTMEEFNHSYHACGVIATIAFLMINAVSNGQVR-GDSYSEGCLGQTG-ARIWLFLGFML |
W..I.DAA..YPT..EFN...H..........L.IN.V.......GDSYSEGCLGQTG...IWLF.GFML | |
Retrocopy | WLVIMDAAIIYPTVGEFN---HS*PAYIVLWHLTINVVTDDFTSLGDSYSEGCLGQTG<TGIWLFAGFML |
Parental | AFGSLITSMWILF |
.FGSLI..M..L. | |
Retrocopy | VFGSLIALMYCLW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018575 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012615 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007483 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002060 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000032217 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001182 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001711 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022246 | 2 retrocopies |
retro_itri_1228 , retro_itri_1329,
|
Ictidomys tridecemlineatus | ENSSTOG00000023740 | 1 retrocopy |