RetrogeneDB ID: | retro_itri_1537 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393533.1:1172540..1173745(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OSBPL9 | ||
Ensembl ID: | ENSSTOG00000000692 | ||
Aliases: | None | ||
Description: | oxysterol binding protein-like 9 [Source:HGNC Symbol;Acc:16386] |
Percent Identity: | 91.81 % |
Parental protein coverage: | 84.21 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SGHSPPSSSLTSPSHVNLSPNTVPEFSYSSSEDEFYDADEFHQSGSSPKRLIDSSGSASVLTHSSSGNSL |
S.HSP.SSSLTSP.HV.LSPNT.PEFS..SSEDEFYDADEF.QSGSSPKRLI.SSGSASVLTHSSS.NSL | |
Retrocopy | SRHSPHSSSLTSPCHVTLSPNTIPEFSNCSSEDEFYDADEFYQSGSSPKRLIYSSGSASVLTHSSS*NSL |
Parental | KRPDTTESLNSSMSNGTSDADLFDSHD-DRDDDGEAGSVEEHKSVIMHLLSQVRLGMDLTKVVLPTFILE |
K.P.TTESLNS.MSNGTSDADLFDSHD.DRD.DGEAGSVEEHKSVIMH.LSQVRLGMDLTKVVLPTFILE | |
Retrocopy | KHPETTESLNSCMSNGTSDADLFDSHD>DRDHDGEAGSVEEHKSVIMHFLSQVRLGMDLTKVVLPTFILE |
Parental | RRSLLEMYAD-FFAHPDLFVSISDQKDPRDRMVQVVKWYLSAFHAGRKGSVAKKPYNPILGEIFQCHWTL |
RRSLL.MYAD.FFAHPDLFVSISDQKDPRDRMVQ.VKWYLSAFHAGRKGSVAKK.YNPILGEIFQ.HWTL | |
Retrocopy | RRSLLGMYAD>FFAHPDLFVSISDQKDPRDRMVQDVKWYLSAFHAGRKGSVAKKLYNPILGEIFQYHWTL |
Parental | PNDTEENTELVSEGPVPWVSKNSVTFVAEQVSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHN |
PNDTEENTELVSEG.VP.VSKNSVT.VAEQVS.HPPISAFYA.CFNKKIQFNAHIWTKSKFLG.SIGVHN | |
Retrocopy | PNDTEENTELVSEGLVP*VSKNSVTKVAEQVSYHPPISAFYADCFNKKIQFNAHIWTKSKFLGISIGVHN |
Parental | IGQGCVSCLDYDEHYILTFPNGYG-SILTVPWVELGGECNINCSKTGYSANIVFHTKPFYGGKKHRITAE |
IGQGCVSCLDYDEHYIL.FPNGYG.SILTVPWVELGGECNINCSKTGYSANI.FHTKPFYGGKK.RITAE | |
Retrocopy | IGQGCVSCLDYDEHYILIFPNGYGRSILTVPWVELGGECNINCSKTGYSANIIFHTKPFYGGKKYRITAE |
Parental | IFSPNDKKSFCSIEGEWNGVMYAKYATGENTVFVDTKKLPIIKKKVRKLEDQN |
.FSPNDKKSFCSIEGEWNGVMYAKY.TGENTVFVDTKKLPIIKKKVRKLEDQN | |
Retrocopy | FFSPNDKKSFCSIEGEWNGVMYAKYETGENTVFVDTKKLPIIKKKVRKLEDQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000021574 | 1 retrocopy | |
Felis catus | ENSFCAG00000010298 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004787 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002731 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009199 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016138 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004303 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001358 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000000730 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000692 | 1 retrocopy |
retro_itri_1537 ,
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