RetrogeneDB ID: | retro_itri_1666 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393619.1:640379..641188(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000008188 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSSTOG00000012944 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 93.75 % |
Parental protein coverage: | 90.03 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MADDAGAAGGPG-GPGGPGMGGRGGFRGGFGSGLRGRGRGRGRGRGRGRGARGGKAEDKEWIPVTKLGRL |
MADDAGAAGGP..GPG.PGMGG.G.FRGGFG..LRGRGRGRG.GRG.GRGARGGKAEDKEWIPVTKLGRL | |
Retrocopy | MADDAGAAGGPR<GPGVPGMGGLG-FRGGFGRVLRGRGRGRGGGRGCGRGARGGKAEDKEWIPVTKLGRL |
Parental | VKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGL |
VKDMKIKSLEEIYLFS.PIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGH.G. | |
Retrocopy | VKDMKIKSLEEIYLFSMPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHIGT |
Parental | GVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPV |
GVKCSKEV.T.IRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPV | |
Retrocopy | GVKCSKEVPTTIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPV |
Parental | PKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQVFLE |
PKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQ.F.. | |
Retrocopy | PKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004508 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008877 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000012944 | 4 retrocopies |