RetrogeneDB ID: | retro_itri_42 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393471.1:2593046..2593499(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000004613 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000028142 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.21 % |
Parental protein coverage: | 93.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHT |
SD.......S..DKRAHHNALE.KR.D.IKDSFHSL.DSVPSLQG.KASRAQILDKATE.IQYM.RKNHT | |
Retrocopy | SDKDDIQVESKDDKRAHHNALEQKRKDPIKDSFHSLQDSVPSLQGDKASRAQILDKATEEIQYMQRKNHT |
Parental | HQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDNSLYTNAKGSTISAFDGGSDSSSESEPEEPQ |
HQQD.D.L.RQNALLEQQVRAL.KARSSAQLQTNYP.SDNSLYTN..GSTISA.DGGSDS.SE.EPEEPQ | |
Retrocopy | HQQDTDGLERQNALLEQQVRALQKARSSAQLQTNYPCSDNSLYTNPRGSTISASDGGSDSGSEREPEEPQ |
Parental | SRKKLRMEA |
..KKLRMEA | |
Retrocopy | NGKKLRMEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003472 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000016212 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000019702 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000010172 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003973 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000002967 | 1 retrocopy | |
Felis catus | ENSFCAG00000010347 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004341 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006859 | 3 retrocopies | |
Mus musculus | ENSMUSG00000059436 | 8 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014373 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000016245 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005911 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008049 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000028142 | 1 retrocopy |
retro_itri_42 ,
|
Tupaia belangeri | ENSTBEG00000012645 | 1 retrocopy |