RetrogeneDB ID: | retro_mdom_302 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:46251502..46251886(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000001863 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.04 % |
Parental protein coverage: | 70.49 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | VIEMENSVFQHFHPECELSISKTINLELHAGYVYFSMTYYFGHHDVALKHFSMFFREQSKKKMKHAEKIL |
....E..V.Q.FH..CE.S..KTIN.E.HA.YVYFSM.YYF.HH..ALK.FS.FF.E.SKKK..HAEK.. | |
Retrocopy | LLKFESLVSQNFHLDCEFSTNKTINMEYHASYVYFSMAYYFSHHHIALKNFSKFF*E*SKKK-EHAEKLF |
Parental | QYLTKRGGHPVLENILKSEVQYWSDGLQALEEALVIEKAVNEELLILCNKAKEHEDPHL |
QYL.K..GHPVL.NIL.S.V...S..L..L.EALVI....N..L..L..K.K...DP.. | |
Retrocopy | QYLIKGVGHPVLKNILMSKVED*SNDLKPLDEALVIDQTINK*L*ALYHKEKGNDDPDM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000004685 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001863 | 5 retrocopies | |
Monodelphis domestica | ENSMODG00000007582 | 9 retrocopies | |
Monodelphis domestica | ENSMODG00000013730 | 3 retrocopies |