RetrogeneDB ID: | retro_mdom_6 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 3:213507211..213507823(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000024872 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000013730 | ||
Aliases: | None | ||
Description: | Ferritin [Source:UniProtKB/TrEMBL;Acc:F6XQK5] |
Percent Identity: | 85.88 % |
Parental protein coverage: | 75.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PPSPGAPAVTSFRDQLPLASGTNPLS-AVGAMSSTSQIRQNYSPEAEAAVNRLANLFLQASYTYLSLGFY |
P..P...AVTSFR.QLP.AS.TNPLS.A.G.MSS.SQI.QNYSPEAEA.VNRLANLFLQASYTYLSLGFY | |
Retrocopy | PTIPWGSAVTSFRNQLPPASRTNPLSDASGTMSSSSQICQNYSPEAEATVNRLANLFLQASYTYLSLGFY |
Parental | FDRDDVALAKMSSFFRELSREKREAAERLLRLQNQRGGRVHLQAVVKPAQDEWGGSRDAIESALNLEKGL |
FD.DDVAL.KMSSFFRELS.EK.EA.ERLL.LQNQ.GG.V.LQ.VVKPAQDEWGGSRDAIESALNLEKGL | |
Retrocopy | FDQDDVALVKMSSFFRELSLEKGEAPERLLCLQNQHGGHVYLQVVVKPAQDEWGGSRDAIESALNLEKGL |
Parental | NQTLLKLHALASSQGDPHLCDFLESHYLEE |
NQTLLKLHALASSQGDPHLCDFLESHYLEE | |
Retrocopy | NQTLLKLHALASSQGDPHLCDFLESHYLEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000006157 | 5 retrocopies | |
Monodelphis domestica | ENSMODG00000001863 | 5 retrocopies | |
Monodelphis domestica | ENSMODG00000007582 | 9 retrocopies | |
Monodelphis domestica | ENSMODG00000013730 | 3 retrocopies |
retro_mdom_1989, retro_mdom_6 , retro_mdom_745,
|
Sarcophilus harrisii | ENSSHAG00000003637 | 1 retrocopy |