RetrogeneDB ID: | retro_mdom_516 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:125640690..125641737(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTPN11 | ||
Ensembl ID: | ENSMODG00000003120 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase, non-receptor type 11 [Source:HGNC Symbol;Acc:9644] |
Percent Identity: | 84.86 % |
Parental protein coverage: | 59.02 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQDLKYDVGGGEKFDSLTDLVEHYKKNPMVET |
L.R.....P.....S..TGDDKGESNDGKSK.TH..IRCQ.LKYDVGGGEKF.SLTD.VEHYKKNPMVET | |
Retrocopy | LPRGGKPEPLREFYSFCTGDDKGESNDGKSKMTHFKIRCQHLKYDVGGGEKFASLTDFVEHYKKNPMVET |
Parental | LGTVLQLKQPLNTTRINAAEIESRVRELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKN |
LGTVLQLKQPLNTTRINAAEIES.VRELS.LAETTDKVKQGFWEEF.TLQQQECKLLYSRKEGQ.QENKN | |
Retrocopy | LGTVLQLKQPLNTTRINAAEIESWVRELS*LAETTDKVKQGFWEEFGTLQQQECKLLYSRKEGQQQENKN |
Parental | KNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMV |
KN.YKNILPFDHTRVVLHDGD.NEPVSDYINANI..PEFETKC.N.KPKK.YIATQGCLQNTVNDFWRMV | |
Retrocopy | KNIYKNILPFDHTRVVLHDGDQNEPVSDYINANITIPEFETKC-NTKPKKNYIATQGCLQNTVNDFWRMV |
Parental | FQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGAMRVRNVKESAAHDYTLRELKLSKVGQGNTERTV |
FQENSRVI.MT.KEVERGKSKCVKYWP.EYALKEYG.MRVRNVKESA.H..T...LKLSK.GQG.TE.TV | |
Retrocopy | FQENSRVIAMTMKEVERGKSKCVKYWPNEYALKEYGTMRVRNVKESASHVHTFG*LKLSKFGQGDTEKTV |
Parental | WQYHFRTWPDHGVPTDPGGVLDFLEEVHHKQESIPDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVD |
WQYHF.TWPDHGVP.DP.G.LDFLE..H.KQESIPDAG.VV..CSAGIGRTGTFIVIDILIDIIREKGVD | |
Retrocopy | WQYHFGTWPDHGVPIDPRGLLDFLEAIHNKQESIPDAGSVVLYCSAGIGRTGTFIVIDILIDIIREKGVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .33 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .79 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012464 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010689 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013253 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000003120 | 1 retrocopy |
retro_mdom_516 ,
|
Monodelphis domestica | ENSMODG00000021422 | 1 retrocopy |