RetrogeneDB ID: | retro_mdom_980 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 3:109651762..109652176(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000001832 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.87 % |
Parental protein coverage: | 57.2 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MSRPVRNRKVVDYSQFQESDDADEDYGRDSAPPAKKIRSSPREAKNKRRSGKNSQEDSEDSEEKDVKTKK |
MS...RNRKVVDYSQFQE.DDAD.DYGRDSA.P.KKI..SPRE.KNKRRS.............K...... | |
Retrocopy | MSQFIRNRKVVDYSQFQEFDDADKDYGRDSASPTKKIEASPRETKNKRRSXXXXHRKIVRTLNKKYVRTE |
Parental | DDSHSPEDSEDEKEDHKNVRQQRQAASKAASKQREMLMEDVGSEEEQEEEEEAPFQEKDSGSDEDFLME |
.D............DHKNV.QQ..AASKA.SKQREMLMEDVGS..EQE..EEAPFQEKDS.SD.DFL.E | |
Retrocopy | KDDSH*PEDNEYEKDHKNVHQQQ*AASKAVSKQREMLMEDVGS-KEQEDKEEAPFQEKDSRSDKDFLLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012950 | 1 retrocopy | |
Bos taurus | ENSBTAG00000008001 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000001855 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017212 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000003183 | 1 retrocopy | |
Homo sapiens | ENSG00000069275 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026655 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007829 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005645 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001832 | 1 retrocopy |
retro_mdom_980 ,
|
Nomascus leucogenys | ENSNLEG00000014564 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001904 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000047287 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015641 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000910 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003751 | 1 retrocopy |