RetrogeneDB ID: retro_meug_1017

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold26041:19470..20196(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BCAP31
• Ensembl ID: ENSMEUG00000007345
• Aliases: None
• Description: B-cell receptor-associated protein 31 [Source:HGNC Symbol;Acc:16695]

Sequence

>retro_meug_1017
CTCAGTCTTCAGTGGACTGCACTTGCTATCTGCCTCTATGCAGAGGTCTTTGCTATGCTGCTGCTCTGCACTCCTTTCAT
TTCTCCCAAAAGATGGCAGAAGATCTTTAAGTCCCACTTGGTGCAACTGGTGGTGAGGTATGGCAATACCTTCTTTGTGG
TTTTCATTGTTATCTGGTGCTGCTTCTCATTGATGCTGTGCGGGAGATCAGGCAGTACGATGACGACATGACAGAGAAGG
TGAATCTCCAGAATAACCCTGGGGCCATGGAACACTTCCACATGAAGTTGTTTCAGGCCTAGAGGAACCTCCACATCACT
GGCTTCTCTCTGTTGCTGTCTTTCCTCTCAGACTCCTGGTGACCCTTATCTCCCAGCAGGCCATGCTGTTGGCCTCCAAT
GAAGCCTTCAAAAAGCAGGCTGAGGGTGCCAGCGAAGCCGCCAAGAAATACATAGAAGAAAATGACAAGCTGAAGAAGGA
AGCTGGCACCAATGGTGGTAAATTGGACCTGAATGATGATGTCCTAGCGGGGAACAAAAACTTGAAGGCTGAACTCAAGA
AACTCACAGAGGAGCTGGCCATCAGCAACGCAACCTGGAGAGAGGAGAAAATGAGGCTCTGGTCATGCTCAAGCAGTCAA
AGAGTACGACTGACCAAAGAGTACGACTGTCTGCTGGAGGAGCATACCCGTCACCAGGCTGCAGTGGACGGGCTGACAGA
CAAGAA

Alignment

ORF - retro_meug_1017 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.49 %
• Parental protein coverage: 99.59 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVQLVVSYGNTFFVVLIVI-LVLLLIDAVRE
          .SLQWTA.A..LYAEVFA.LLLC.PFISPKRWQKIFKS.LVQLVV.YGNTFFVV.IVI.LVLLLIDAVRE
Retrocopy LSLQWTALAICLYAEVFAMLLLCTPFISPKRWQKIFKSHLVQLVVRYGNTFFVVFIVI<LVLLLIDAVRE

Parental  IRKYDD-VTEKVNLQNNPGAMEHFHMKLFRAQRNLHIAGFSLLLSFL-LRRLVTLISQQATLLASNEAFK
          IR.YDD..TEKVNLQNNPGAMEHFHMKLF.A.RNLHI.GFSLLLSFL.LR.LVTLISQQA.LLASNEAFK
Retrocopy IRQYDDDMTEKVNLQNNPGAMEHFHMKLFQA*RNLHITGFSLLLSFL<LRLLVTLISQQAMLLASNEAFK

Parental  KQAEGASEAAKKYIEENDKLKKEAGTNGGKLDLNDDVLAENKNLKAELKKLTEELDIS-KRNLERAENEA
          KQAEGASEAAKKYIEENDKLKKEAGTNGGKLDLNDDVLA.NKNLKAELKKLTEEL.IS..RNLER.ENEA
Retrocopy KQAEGASEAAKKYIEENDKLKKEAGTNGGKLDLNDDVLAGNKNLKAELKKLTEELAIS<QRNLERGENEA

Parental  LAMRKQSKGLTKEYDRLLEEYTRLQAAVDGPTDKKE
          L.M.KQSK..T....RL............G..D..E
Retrocopy LVMLKQSKSTTDQRVRLSAGGAYPSPGCSGRADRQE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1017 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1017 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000019245	1 retrocopy	retro_cfam_482,
Callithrix jacchus	ENSCJAG00000011348	1 retrocopy	retro_cjac_2552,
Echinops telfairi	ENSETEG00000008662	1 retrocopy	retro_etel_1522,
Macropus eugenii	ENSMEUG00000007345	3 retrocopies	retro_meug_1017 , retro_meug_1867, retro_meug_208,
Monodelphis domestica	ENSMODG00000008300	2 retrocopies	retro_mdom_1110, retro_mdom_24,
Sarcophilus harrisii	ENSSHAG00000009111	1 retrocopy	retro_shar_31,