RetrogeneDB ID: retro_meug_1469

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold416377:3018..3325(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ERH
• Ensembl ID: ENSMEUG00000014602
• Aliases: None
• Description: enhancer of rudimentary homolog (Drosophila) [Source:HGNC Symbol;Acc:3447]

Sequence

>retro_meug_1469
TCTCATACCATTTTGTTGGTACAACCTACCAAGAGGCCAGAAGGCCGACCTTATGCTGATTATGAATCAGTGAATGAATT
CATGGAAGGAGTTTGTAAAAATGTATGAAGAACATCTGAAGAGAATGAATCCCAACAATCCCTCCATCACATATGACATC
AGTCAGTTGTTTGATTTCACTGATGATCTGGCAGATCTTTGCTGCCTTGTGTACTGAGCAGACACTCAAATGTACCAGCC
CTACAACAAATATTGGATCAAAGAGATCTATGTGCATCTCCATCGGCAGGCCCAGCAAGTCAGCAAA

Alignment

ORF - retro_meug_1469 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.54 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SHTILLVQPTKRPEGRTYADYESVNECMEGVC-KMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCL
          SHTILLVQPTKRPEGR.YADYESVNE.MEGVC.KMYEEHLKRMNPN.PSITYDISQLFDF.DDLADL.CL
Retrocopy SHTILLVQPTKRPEGRPYADYESVNEFMEGVC>KMYEEHLKRMNPNNPSITYDISQLFDFTDDLADLCCL

Parental  VYRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK
          VY.ADTQ.YQPYNK.WIKE.IYV.L.RQAQQ..K
Retrocopy VY*ADTQMYQPYNKYWIKE-IYVHLHRQAQQVSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1469 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1469 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000014529	1 retrocopy	retro_amel_1906,
Callithrix jacchus	ENSCJAG00000014940	2 retrocopies	retro_cjac_209, retro_cjac_846,
Dipodomys ordii	ENSDORG00000006912	3 retrocopies	retro_dord_250, retro_dord_406, retro_dord_562,
Equus caballus	ENSECAG00000019178	1 retrocopy	retro_ecab_45,
Macropus eugenii	ENSMEUG00000014602	3 retrocopies	retro_meug_1469 , retro_meug_498, retro_meug_64,
Myotis lucifugus	ENSMLUG00000011879	1 retrocopy	retro_mluc_142,
Macaca mulatta	ENSMMUG00000021571	1 retrocopy	retro_mmul_1649,
Oryctolagus cuniculus	ENSOCUG00000004636	1 retrocopy	retro_ocun_42,
Otolemur garnettii	ENSOGAG00000029388	5 retrocopies	retro_ogar_1170, retro_ogar_1537, retro_ogar_2710, retro_ogar_625, retro_ogar_854,
Rattus norvegicus	ENSRNOG00000004883	3 retrocopies	retro_rnor_1721, retro_rnor_2670, retro_rnor_308,