Parental gene:

ENSCJAG00000014940

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:94626640..94639767(-)


>ENSCJAG00000014940
CAGTCTCACACTATTTTGCTGGTGCAGCCTACCAAGAGGCCAGAAGGCAGAACTTATGCAGACTACGAATCTGTGAATGA
ATGCATGGAAGGCGTTTGTAAAATGTATGAAGAACATCTGAAAAGAATGAATCCCAACAGTCCTTCTATCACATATGACA
TCAGTCAGTTGTTTGATTTCATTGATGATCTGGCAGACCTCAGCTGCCTGGTTTACCGGGCTGATACCCAGACATACCAG
CCTTATAACAAAGACTGGATTAAAGAGAAGATCTACGTGCTCCTTCGTCGGCAGGCCCAACAAGCTGGGAAATAA

Library Parental gene expression (RPM)
SRP051959_spleen 18 .78 RPM
SRP051959_skeletal_muscle 12 .73 RPM
SRP051959_lymph_node 17 .44 RPM
SRP051959_lung 17 .00 RPM
SRP051959_liver 20 .38 RPM
SRP051959_kidney 18 .55 RPM
SRP051959_heart 14 .82 RPM
SRP051959_colon 17 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014529 ortholog_one2many 1 retrogene
retro_amel_1906,
Bos taurus ENSBTAG00000017798 possible_ortholog 4 retrogenes
retro_btau_1260, retro_btau_438, retro_btau_651, retro_btau_795,
Dipodomys ordii ENSDORG00000006912 ortholog_one2many 3 retrogenes
retro_dord_250, retro_dord_406, retro_dord_562,
Equus caballus ENSECAG00000019178 possible_ortholog 1 retrogene
retro_ecab_45,
Erinaceus europaeus ENSEEUG00000007758 possible_ortholog 6 retrogenes
retro_eeur_105, retro_eeur_108, retro_eeur_115, retro_eeur_116, retro_eeur_185, retro_eeur_546,
Echinops telfairi ENSETEG00000016172 possible_ortholog 5 retrogenes
retro_etel_1122, retro_etel_1451, retro_etel_715, retro_etel_716, retro_etel_975,
Homo sapiens ENSG00000100632 possible_ortholog 2 retrogenes
retro_hsap_3594, retro_hsap_3799,
Gorilla gorilla ENSGGOG00000004751 possible_ortholog 2 retrogenes
retro_ggor_2424, retro_ggor_2553,
Macropus eugenii ENSMEUG00000014602 ortholog_one2many 3 retrogenes
retro_meug_1469, retro_meug_498, retro_meug_64,
Microcebus murinus ENSMICG00000009623 possible_ortholog 1 retrogene
retro_mmur_74,
Myotis lucifugus ENSMLUG00000011879 ortholog_one2many 1 retrogene
retro_mluc_142,
Macaca mulatta ENSMMUG00000021571 ortholog_one2many 1 retrogene
retro_mmul_1649,
Mus musculus ENSMUSG00000021131 possible_ortholog 4 retrogenes
retro_mmus_1576, retro_mmus_2599, retro_mmus_3184, retro_mmus_39,
Nomascus leucogenys ENSNLEG00000001514 possible_ortholog 2 retrogenes
retro_nleu_1128, retro_nleu_1604,
Oryctolagus cuniculus ENSOCUG00000004636 ortholog_one2many 1 retrogene
retro_ocun_42,
Otolemur garnettii ENSOGAG00000029388 ortholog_one2many 5 retrogenes
retro_ogar_1170, retro_ogar_1537, retro_ogar_2710, retro_ogar_625, retro_ogar_854,
Ochotona princeps ENSOPRG00000000086 possible_ortholog 2 retrogenes
retro_opri_1140, retro_opri_519,
Pongo abelii ENSPPYG00000005939 possible_ortholog 2 retrogenes
retro_pabe_2954, retro_pabe_3104,
Pan troglodytes ENSPTRG00000006482 possible_ortholog 2 retrogenes
retro_ptro_2433, retro_ptro_2577,
Rattus norvegicus ENSRNOG00000004883 ortholog_one2many 3 retrogenes
retro_rnor_1721, retro_rnor_2670, retro_rnor_308,
Sorex araneus ENSSARG00000005558 possible_ortholog 11 retrogenes
retro_sara_114, retro_sara_127, retro_sara_151, retro_sara_221, retro_sara_251, retro_sara_295, retro_sara_298, retro_sara_490, retro_sara_56, retro_sara_58, retro_sara_66,
Sus scrofa ENSSSCG00000002307 possible_ortholog 1 retrogene
retro_sscr_748,
Tursiops truncatus ENSTTRG00000013963 possible_ortholog 2 retrogenes
retro_ttru_1671, retro_ttru_614,
Vicugna pacos ENSVPAG00000006444 possible_ortholog 1 retrogene
retro_vpac_423,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_209 90.29 99.04
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2. retro_cjac_846 91.35 100.00
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Download FASTA sequences of all ENSCJAG00000014940 retrocopies