RetrogeneDB ID: | retro_meug_1881 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold68406:8890..9339(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL8 | ||
Ensembl ID: | ENSMEUG00000013824 | ||
Aliases: | None | ||
Description: | ribosomal protein L8 [Source:HGNC Symbol;Acc:10368] |
Percent Identity: | 83.23 % |
Parental protein coverage: | 58.37 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | RKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFIAAE-GIHTGQFVYCG |
RKGAAKL.A..FA.RHGYIKGIVK.IIHDPGRGAPLAKVAFRDPYRF.KRTELFIAAE..I.TGQFV.CG | |
Retrocopy | RKGAAKLPAAHFADRHGYIKGIVKHIIHDPGRGAPLAKVAFRDPYRFRKRTELFIAAE<SIPTGQFVDCG |
Parental | KKAQLNIG-NVLPVGTMPEGTIVC-C-LEEKPGDRGKLARASGNYATVISHN-PETKKTRVKLPSGSKKV |
KKAQL.IG..VLPVGTMP..T..C.C.LEEKPGD..KLARASGNYATVIS.N.PETKKTRVKLPSGSKK. | |
Retrocopy | KKAQLSIG<HVLPVGTMPDSTP*C<CCLEEKPGDQSKLARASGNYATVISRN<PETKKTRVKLPSGSKKA |
Parental | ISSANRAVVGVVAGG |
.SSANRAV.GVVAGG | |
Retrocopy | VSSANRAVLGVVAGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000017933 | 1 retrocopy | |
Bos taurus | ENSBTAG00000026327 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021388 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000013824 | 9 retrocopies |
retro_meug_1116, retro_meug_1354, retro_meug_1757, retro_meug_1817, retro_meug_1881 , retro_meug_670, retro_meug_941, retro_meug_960, retro_meug_974,
|
Macaca mulatta | ENSMMUG00000013379 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000004283 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000006022 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000024716 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048523 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000013568 | 2 retrocopies |