RetrogeneDB ID: | retro_meug_432 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold1134:22787..23610(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBP2 | ||
Ensembl ID: | ENSMEUG00000001887 | ||
Aliases: | None | ||
Description: | poly(rC) binding protein 2 [Source:HGNC Symbol;Acc:8648] |
Percent Identity: | 76.34 % |
Parental protein coverage: | 74.86 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | SSMTNSTAASRPPVTLRLVVPASQCG-SLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQ |
SSMTNS.A.SRPPVTLRLVVPASQCG.SLIGKGGCKIKEIR.S.GAQVQVAGDMLP.STE.A.TIAGI.Q | |
Retrocopy | SSMTNSIASSRPPVTLRLVVPASQCG<SLIGKGGCKIKEIRDSIGAQVQVAGDMLPDSTEWAVTIAGILQ |
Parental | SIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLE |
SIIECVKQIC.VMLETLSQSP..GVTIPY..K.SS.PVIFAGGQ.RYSTG.DS.SFPHTTPSMCLN..LE | |
Retrocopy | SIIECVKQICMVMLETLSQSPL*GVTIPYWSKLSSFPVIFAGGQNRYSTGNDSVSFPHTTPSMCLNHGLE |
Parental | GPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSG-SEPRVPKVKGYXXGLDASAQTTSHE |
GPPLEA.T.Q..YAIPQPDLT.LHQ.AMQQSHFPM.HGNT.FSG..E...P..KGY...LD.SA.T.SHE | |
Retrocopy | GPPLEACTLQEEYAIPQPDLTELHQ*AMQQSHFPMMHGNTRFSG>FESSSPEGKGYWASLDTSA*TNSHE |
Parental | LTIPNDXXXXXXXXQGAK-INEIRQMSGAQIKIANPVEGSTDRQVTI-TGSAASISL-AQYLINVRLSS |
LTI.ND..........AK.IN.I.QMSGAQIKI.NPV.GSTDRQ.T..TGSAA.ISL.AQYLINV.L.. | |
Retrocopy | LTISNDLISS*MGVKAAK<INKICQMSGAQIKIINPVKGSTDRQDTL>TGSAACISL>AQYLINVSLEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |