RetrogeneDB ID: | retro_rnor_2088 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:182899226..182899852(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000017708 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBP2 | ||
Ensembl ID: | ENSRNOG00000036852 | ||
Aliases: | None | ||
Description: | poly(rC)-binding protein 2 [Source:RefSeq peptide;Acc:NP_001013241] |
Percent Identity: | 85.92 % |
Parental protein coverage: | 57.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MDTG-VIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIF |
MD.G...E.GLNVTLTIRLLMHGKEVGSIIGKKGESVK..REESGARINISEGNCPERIITL.GPTNAIF | |
Retrocopy | MDAG<LTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIF |
Parental | KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP |
KAFAMIIDKLEEDI.SSMTNSTAASRPPVTLRLVVPA.QCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP | |
Retrocopy | KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP |
Parental | NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP-KGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSAS |
NSTERAITIAG.PQS..ECVKQIC.VMLETLSQSP.....TIPY.P.P.SSPVI.AGGQDR.S...D.A. | |
Retrocopy | NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCS---DAAG |
Parental | FPH |
.PH | |
Retrocopy | YPH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 50 .69 RPM | 120 .35 RPM |
SRP017611_kidney | 88 .20 RPM | 156 .10 RPM |
SRP017611_liver | 48 .21 RPM | 64 .21 RPM |