RetrogeneDB ID: | retro_meug_828 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold199380:3..621(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBP2 | ||
Ensembl ID: | ENSMEUG00000001887 | ||
Aliases: | None | ||
Description: | poly(rC) binding protein 2 [Source:HGNC Symbol;Acc:8648] |
Percent Identity: | 88.68 % |
Parental protein coverage: | 57.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGES-VKKMREESGARINISEGNCPERIITLAGPTNAIF |
.DTGVIEGG.NVTLTIRLLM.GKEV.SIIGKKGES.VKK.REESGARINISEGNCPERIITLAGPTNAIF | |
Retrocopy | VDTGVIEGG*NVTLTIRLLMPGKEVESIIGKKGES>VKKIREESGARINISEGNCPERIITLAGPTNAIF |
Parental | KAFAMIIDKLEEDISSSMTNSTAASRPPVTL-RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML |
KAFAMIIDKL.EDISSSMT.STAASR.PVTL..LVVPASQCGSLIGKGGCKIKEIRESTG.QVQVAGDML | |
Retrocopy | KAFAMIIDKLKEDISSSMTSSTAASRTPVTL<ELVVPASQCGSLIGKGGCKIKEIRESTGTQVQVAGDML |
Parental | PNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSAS |
PNSTE.A.TIAGIPQSIIECVKQICVVMLE....SP.KGVTI.YR.KPSS.PVIFAGGQD.YST.SDSAS | |
Retrocopy | PNSTEQATTIAGIPQSIIECVKQICVVMLE----SPLKGVTIRYRSKPSSYPVIFAGGQDGYSTASDSAS |
Parental | FP |
FP | |
Retrocopy | FP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |