RetrogeneDB ID: | retro_meug_689 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold161843:653..1214(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PITPNB | ||
Ensembl ID: | ENSMEUG00000010442 | ||
Aliases: | None | ||
Description: | phosphatidylinositol transfer protein, beta [Source:HGNC Symbol;Acc:9002] |
Percent Identity: | 83.77 % |
Parental protein coverage: | 74.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VAEASKNETGGGEGIEVLTNEPYEKDGEKGQYTHKIYHLKSKVPGFVRMIAPEGSLVFHEKAWNAYPYCR |
V.E.SKNETGGG.GIEVL.NE.YEKDGEK..YTHKI.HLK.KVPGFVRMI.PEGSLVFH.KAWN..PY.R | |
Retrocopy | VIEVSKNETGGGGGIEVLMNELYEKDGEKEEYTHKIDHLKNKVPGFVRMIVPEGSLVFHDKAWNTHPYFR |
Parental | TIVTNEYMKDDFFIKIETWHKPDLGTIENVHNLDPNTWKTVEIVHIDIADRSQVEPADYKPDEDPALFQS |
TIV.NEYMKDDFFIKIETWHKPDLG.IENVH.L.PN.WKTVEIVHI.IADRSQVEPADYK.DEDPALFQS | |
Retrocopy | TIVMNEYMKDDFFIKIETWHKPDLGIIENVHKLAPNIWKTVEIVHINIADRSQVEPADYKRDEDPALFQS |
Parental | VKTKRGPLGPNWKKDLANNQDSPQMCAYKLVTIKFKWWGLQSKVENFIQKQ |
VKTKR..LGPN.K....N.QDSPQMC.YKL.TIKFKWWGLQSKVENFIQKQ | |
Retrocopy | VKTKRRSLGPN*K----NDQDSPQMCVYKLGTIKFKWWGLQSKVENFIQKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012309 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012298 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010442 | 3 retrocopies |
retro_meug_392, retro_meug_689 , retro_meug_786,
|
Oryctolagus cuniculus | ENSOCUG00000000511 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000391 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002540 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000293 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000018546 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001148 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001278 | 2 retrocopies |