RetrogeneDB ID: | retro_ocun_1620 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018719:1513886..1514695(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PITPNB | ||
Ensembl ID: | ENSOCUG00000000511 | ||
Aliases: | None | ||
Description: | phosphatidylinositol transfer protein, beta [Source:HGNC Symbol;Acc:9002] |
Percent Identity: | 91.14 % |
Parental protein coverage: | 99.63 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MIIEISRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYEKDGEKGQYTHKIYHLKSKVPAF |
..I...RV.LPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNE.YE.DGEK.Q.THKIYHLKSKVPAF | |
Retrocopy | VLIKEFRVGLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNELYEEDGEKRQHTHKIYHLKSKVPAF |
Parental | VRMIAPEGSLVFHEKAWNAYPYCRTIVT-NEYMKDDFFIKIETWHKPDLGTLENVHGLDPNTWKTVEIVH |
VRMIAPEGSLVFHEKAWN.YP.CRTI.T.NEYMKDDF.IKIET.HKPDLGTLENVHGLDPNTWKTVEIVH | |
Retrocopy | VRMIAPEGSLVFHEKAWNSYPCCRTIAT<NEYMKDDFVIKIET*HKPDLGTLENVHGLDPNTWKTVEIVH |
Parental | IDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKELANKPDCPQMCAYKLVTIKFKWWGLQSKVE |
IDIADR.QVEPADYKADEDPAL.QSVKTKRGPLGPNWKKELANKPDCPQM.AYKLVTIKFKWWG.QSK.E | |
Retrocopy | IDIADRNQVEPADYKADEDPALVQSVKTKRGPLGPNWKKELANKPDCPQM*AYKLVTIKFKWWGMQSKAE |
Parental | NFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRMEDETQKELETMRKKGSVRGTSAADV |
NFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRR.EDETQKELETM.KKGSV.GTSAADV | |
Retrocopy | NFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRTEDETQKELETMGKKGSV*GTSAADV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .76 RPM | 94 .54 RPM |
SRP017611_kidney | 1 .42 RPM | 59 .90 RPM |
SRP017611_liver | 2 .08 RPM | 90 .56 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012309 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012298 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010442 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000511 | 1 retrocopy |
retro_ocun_1620 ,
|
Otolemur garnettii | ENSOGAG00000000391 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002540 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000293 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000018546 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001148 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001278 | 2 retrocopies |