RetrogeneDB ID: | retro_tbel_4285 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_75321:1092..1511(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PITPNB | ||
Ensembl ID: | ENSTBEG00000000293 | ||
Aliases: | None | ||
Description: | phosphatidylinositol transfer protein, beta [Source:HGNC Symbol;Acc:9002] |
Percent Identity: | 82.98 % |
Parental protein coverage: | 51.47 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYEKDGEKGQYTHKIYHLKSKVPAFVRMIAPE- |
VLP..VQEY.VGQLYSV.EA.KNET.GGEG.EVLKNEPYEKDGE.GQYTHK.YHLK..VPAF.RM.APE. | |
Retrocopy | VLPYPVQEYKVGQLYSVTEARKNETEGGEGTEVLKNEPYEKDGERGQYTHKLYHLKTRVPAFRRMMAPE< |
Parental | GSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDLGTLENVHGLDPNTWKTVEIVHIDIADRSQ |
GSLVFHEKAWN.YP..RTIVTNE.MKDDFFIKIETWHKPDLGTLENVHGL....WKTVEIVH.DI.DRSQ | |
Retrocopy | GSLVFHEKAWNVYPC*RTIVTNECMKDDFFIKIETWHKPDLGTLENVHGLESDIWKTVEIVHTDISDRSQ |
Parental | V |
V | |
Retrocopy | V |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012309 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012298 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010442 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000511 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000391 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002540 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000293 | 1 retrocopy |
retro_tbel_4285 ,
|
Takifugu rubripes | ENSTRUG00000018546 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001148 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001278 | 2 retrocopies |