RetrogeneDB ID: | retro_meug_795 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold19:13495..14791(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMEUG00000010921 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.56 % |
Parental protein coverage: | 96.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELFKRFDLPEGPPESLGRGR |
M...YDVIVLGTGL.EC.L.......GK.VLH..R....GG.S.S..PL......F..P..PP..LG.G. | |
Retrocopy | MNQDYDVIVLGTGLKECALGSLLARLGKRVLHVERSAQRGGDSASLSPLHVAYHHFGVPCSPPDTLGCGS |
Parental | DWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRF |
.W.VDL.PKFL.A.GQLV..L......R.LD..VV...F.YK...I.KVP.TETEAL.S.L.G.FEK.RF | |
Retrocopy | AWKVDLLPKFLIAKGQLVNILTRLDALRFLDLRVVDAGFLYKNHRIQKVPATETEALTSGLLGLFEKHRF |
Parental | RKFLVFVANFDENDPKSFEGVDPQTTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIK |
RKF.V....F.E.DP....GVD.......D....FDL..DV.DF.GHALAL..T..YLD.PCLET..RI. | |
Retrocopy | RKFFVYALKFKEQDPRTYKGVDLWKMNCQDLFQRFDLDRDVRDFAGHALALSLTNEYLDRPCLETLQRIQ |
Parental | LYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQL |
LY..SLA..GKSPYLYP..G.GEL.Q.F.R.....GG....NKPV..I....G.VVG...EG.V.RCKQL | |
Retrocopy | LYTSSLAKNGKSPYLYPRFGIGELAQAFSRFTSSKGGIFLTNKPVEEILIRDGRVVGIRFEGRVTRCKQL |
Parental | ICDPSYIPDRVRKAGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYI |
..DPSY.P.RVR..GQVIR.IC.L.HPI.NTN.ANS..IIIP..Q.NR.SDIY....S.A..VA.QGKYI | |
Retrocopy | V*DPSYVPERVRTVGQVIRAICLLGHPIRNTNGANSGLIIIPGAQTNRSSDIYIFLTSSAQSVAPQGKYI |
Parental | AIVSTTVETAEPEKEIEPALELLEPIDQKFVAISDLYEPTDNGLESQVFCSCSYDATTHFETTCNDIKDI |
AIVST.VE...PEKEI..ALEL.EPI.QKF...SDL..P.D.G..SQ.F...SYDA..HFE..CNDIK.. | |
Retrocopy | AIVSTAVESKDPEKEIQLALELMEPIEQKFIFVSDLHVPSDLGTKSQIFITSSYDASAHFESACNDIKEM |
Parental | YKRMAGTDFDFE |
Y..M.G....F. | |
Retrocopy | YRKMTGSELKFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000010921 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000016418 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005650 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012540 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000011454 | 1 retrocopy |