RetrogeneDB ID: | retro_tbel_2262 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_107845:3614..4304(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GDI1 | ||
Ensembl ID: | ENSTBEG00000012540 | ||
Aliases: | None | ||
Description: | GDP dissociation inhibitor 1 [Source:HGNC Symbol;Acc:4226] |
Percent Identity: | 75. % |
Parental protein coverage: | 53.24 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | ECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANG |
E.ILS.IMSVNGKKVLH.D.NPYY.G.S.S.TPLE.LYKRF......P.SMGRGRD.NVDLIPKF..AN. | |
Retrocopy | ERILSSIMSVNGKKVLHID*NPYYRGKSTSRTPLEDLYKRFKIPGSLPASMGRGRD*NVDLIPKFFKANH |
Parental | QLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDP |
QLVKMLL..E.T.YLD.K..EGSFVYK.GKI.K.PST..EALAS.LMG.FEK.RFRKFLV.V.NFDE.D. | |
Retrocopy | QLVKMLLCAEITCYLDLKMTEGSFVYKEGKISKIPSTGAEALASSLMGLFEKYRFRKFLVYVYNFDEKDS |
Parental | KTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRXXXYLDQPCLETINRIKLYSESLAR-YGKSPY |
.TFEG.DP..TSM.DVY.KFDLGQDVI.FTGHALALY....YLDQPC.ET.NRIKLYSESLAR..GKSPY | |
Retrocopy | RTFEGIDPKKTSM*DVYKKFDLGQDVIGFTGHALALY*TDDYLDQPCCETVNRIKLYSESLAR>HGKSPY |
Parental | LYPLYGLGE-LPQGFARLSAIY |
.YPLYGLG..LPQGFA.LSAIY | |
Retrocopy | FYPLYGLGD<LPQGFAKLSAIY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000010921 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000016418 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005650 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011523 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012540 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000011454 | 1 retrocopy |