RetrogeneDB ID:

retro_meug_933

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold23635:2222..2537(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PPP1R11
Ensembl ID:ENSMEUG00000006493
Aliases:None
Description:protein phosphatase 1, regulatory (inhibitor) subunit 11 [Source:HGNC Symbol;Acc:9285]


Retrocopy-Parental alignment summary:






>retro_meug_933
ACAGATCCCGAAAATCGTAGCCTAACTATTAAACTTTGGAAATGGAAGTCAGAAAAGAAGGTGGAATGGTCAGGTGATAC
TATGGACAATGAGCATTTAGGTCACCGTTCATCAAAATGTTGCGGTATCTATGAAAAGCCTAGGGCCTTTGGCGAAAGCT
CCACAGAGGTCGATGATGAAGATGATGAAGGCTGTGGTCACACTCACTGTGTTTGAGGCCACTGAAAGGAACAGTGTCAT
ATCACCACTGGGCCCCCAACCACTCTTTCCCACCTCCCTAACCTCTCCCAACCCCAACCTGGGTCCATGTAGCAC

ORF - retro_meug_933 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.19 %
Parental protein coverage: 89.57 %
Number of stop codons detected: 3
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalTEXENRSLTIKLRKRKPDKKVEWSSDTVDNEHLGRRSSKCCCIYEKPRAFGESSTESDDEDDEGCGHTHC
T..ENRSLTIKL.K.K..KKVEWS.DT.DNEHLG.RSSKCC.IYEKPRAFGESSTE.DDEDDEGCGHTHC
RetrocopyTDPENRSLTIKLWKWKSEKKVEWSGDTMDNEHLGHRSSKCCGIYEKPRAFGESSTEVDDEDDEGCGHTHC
ParentalVRGHRKGQRRIATGPPTTLS--PADPQPPPGPMQH
V.GH.K.Q..I.TGPPTTLS..P...QP.PG.M.H
RetrocopyV*GH*KEQCHITTGPPTTLSHLPNLSQPQPGSM*H

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_933 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_933 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 13 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000207101 retrocopy
Felis catus ENSFCAG000000135921 retrocopy
Gorilla gorilla ENSGGOG000000268301 retrocopy
Macropus eugenii ENSMEUG00000006493 2 retrocopies
retro_meug_715, retro_meug_933 ,
Macaca mulatta ENSMMUG000000121221 retrocopy
Monodelphis domestica ENSMODG000000160211 retrocopy
Nomascus leucogenys ENSNLEG000000049331 retrocopy
Otolemur garnettii ENSOGAG000000015981 retrocopy
Pongo abelii ENSPPYG000000296421 retrocopy
Pan troglodytes ENSPTRG000000179151 retrocopy
Pteropus vampyrus ENSPVAG000000083301 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000036321 retrocopy



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