RetrogeneDB ID: retro_mluc_1093

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429794:10086975..10087679(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RBMS2
• Ensembl ID: ENSMLUG00000000530
• Aliases: None
• Description: None

Sequence

>retro_mluc_1093
ATTTCGACTTTTGGCTATAACAAGAACAACAAAAACCCATATGTTTCATTGTCTCAGCAGATGGCACCACCTAGTCCAAG
CAACAGCAGCAGTGGGAGCAATGGAAATGACCAGCTGAGCAAAACCAACCTCTACATCCGGGGTTTGCAACCAGGCACTA
CTGACCAGGATCTTGTCAAGTTGTCTCAGTCATATGCAAGATTGTCTCCACTAAGGCCATATTGGACAAGACCACAAACA
AATGCAAAGGCTATGGCTTTGTGGACTTTGACAGTCCTTCAGCTGCATAGAAGGCTGTAACAGCGCTGAAGACCAGTGGT
GTCCAGGCACAGATGGCAAAGCAACAGGAGCAGGACCCCACAAATTTATTCATATCAAACCTCCCACTGTCAATGGATGA
GCAAGAACTGGAGGGAATGCTGAAGCCCTTTGGCCAAGTTATCTCCACTCGAATCCTTCGAGACACCAGTGGGACCAGCA
GAGGGGTTGGCTTTGCAAGGATGGAGTCCACAGAGAAGTGTAAAGCCATCATCACCCACTTTAATGGAAAATATATTAAG
ACACCCCCTTGAGTTCCAGCCCCATCAGACCTGTTGCTTTGCAAATTTGCTGACGGTAGTCCAAAGAAATGACAGAACCA
AGGAAAATTTGTGCAAAATGGACAGGCCTGGCCAAGGAATGGAGACATGGATGGTGTGGCCTTG

Alignment

ORF - retro_mluc_1093 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.58 %
• Parental protein coverage: 58.72 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  IKTFHYNKVSLQPYVSLSQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYG
          I.TF.YNK....PYVSLSQQMAPPSPS....NSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKL.QSY.
Retrocopy ISTFGYNKNNKNPYVSLSQQMAPPSPS----NSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLSQSYA

Parental  -KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQ
          .KIVSTKAILDKTTNKCKGYGFVDFDSPSAA.KAVTALK.SGVQAQMAKQQEQDPTNL.ISNLPLSMDEQ
Retrocopy <KIVSTKAILDKTTNKCKGYGFVDFDSPSAA*KAVTALKTSGVQAQMAKQQEQDPTNLFISNLPLSMDEQ

Parental  ELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFAD
          ELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKC.AIITHFNGKYIKTPP.VPAPSD.LLCKFAD
Retrocopy ELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCKAIITHFNGKYIKTPP*VPAPSDLLLCKFAD

Parental  GGPKKRQNQGKFVPNGRAWPRNGDMGGMAL
          G.PKK.QNQGKFV.NG.AWPRNGDM.G.AL
Retrocopy GSPKK*QNQGKFVQNGQAWPRNGDMDGVAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1093 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000004054	1 retrocopy	retro_amel_454,
Callithrix jacchus	ENSCJAG00000010803	1 retrocopy	retro_cjac_1022,
Homo sapiens	ENSG00000076067	1 retrocopy	retro_hsap_1143,
Myotis lucifugus	ENSMLUG00000000530	1 retrocopy	retro_mluc_1093 ,
Myotis lucifugus	ENSMLUG00000006324	1 retrocopy	retro_mluc_509,
Myotis lucifugus	ENSMLUG00000012068	2 retrocopies	retro_mluc_228, retro_mluc_397,
Myotis lucifugus	ENSMLUG00000012245	1 retrocopy	retro_mluc_579,
Mus musculus	ENSMUSG00000040043	1 retrocopy	retro_mmus_1530,
Pan troglodytes	ENSPTRG00000005104	1 retrocopy	retro_ptro_778,
Pteropus vampyrus	ENSPVAG00000007616	2 retrocopies	retro_pvam_1429, retro_pvam_695,
Rattus norvegicus	ENSRNOG00000003076	1 retrocopy	retro_rnor_1374,
Sus scrofa	ENSSSCG00000000402	1 retrocopy	retro_sscr_546,
Tursiops truncatus	ENSTTRG00000002117	1 retrocopy	retro_ttru_715,