RetrogeneDB ID:

retro_mluc_579

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429768:15505551..15507271(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000000985
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000012245
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_579
CAGCAGCCTGCCGCCGCCGAGCGTGCTGTGCACACCACAAATTTGGATGTCATAAGGGCAAGCCAGTGTGCAGCATGTGG
TCCCGGCGTGATCCCTCACTTCACAAAAGTGGAGTGGACAACATAGTCATTAGAATTGGGGCAAATCCATTGAGAATAAA
GCACTGCATGATACATTTTCTGCTTTCGGTAACATCCTTTCATGCAAGGTGGTTTGTGATGAAAATGGTCCCCAGGGTTA
TGGATTTGTACATTTTGAGACCCAGGGAGCAGCTGAAAGGGCTACTGAAAAAATGAAGGGGATGCTTCTAAATGGCCGCA
GAGTATTTGTTGGGCGATCTAAGTCTTCCAAAGAACGAGAAGCAGGATGGGGAGCTAGGGCAACAGAGTTCACCACGTTC
ACATCAAGAATTTTGGAGAAGACATGGATGACGAGCGCCTTAAGGACTCTTTGGCAAGTTTGGACCTGCCTTAAGTGTCA
AAGTAATGATGGGTGAAGGTGGGACATCCAAAGGTTTTGGATTTGTAAGCTTCGAAAGGGATGAAGATACACAGAAAGCT
GTGGATGAGGTGAACGGAAAGGAGCTCAATGGAAAACAAATCTACATTAGCCGAGCTCATAAAACAGTGGAATGGCAGAC
GGAACTTAGGTGCAAAGTTGAACACATGAACCAAGATAGGGCCACCCGATACCAGGGTGTTAACCTTTACGTGAAAAATC
TTGATGATGGTATTGATGACGGACGTCTCCAGAAAGAGTTTTCTCCATTTGATACAATCACTGGTGCAAAGTTTATGATG
GAGGGTGGTCCTAGCAAAGGGTTTGGTTTTGTACGGTTCTCCTCCCCAGAAGAAGCCACTAAAGCAATTACAGAAATGAA
TGGTAGAATTGTGGCTACCAAGTCATTGTGTGTAGCTTTAGCTCAGTGCAAGGAAGAGCACCAAGCTCATCTCACTAACC
AGTATATGCAGAGAGTGGCAAGTGTGAGAGCTGTGCCCAACCCAGTAATCTTACCCGCCACCAGCCAGCACCTCCTTCAG
GTTACTTCCTGGCAGCTATCTCACAGACTCAGAACCGTGCTGCATACTATCCTCCTCGTCAAATTGCTCAACTAAGACCA
AGGGCTCAGGGTGCCAGACCTCATCCATTCCAAAATCTGCCTGGTGCTTTCTGCCCAGCCGCTCCTGGACCACCATTTAG
TACTGTGAGACCAGCTTCTTCACAGGTTCCACATGTCATGTCCACACAGCGTGTTGCTAACACATCCACACAGACAATGG
GTCCACGTCCTGTAGCGGCGGCGGCTGCAGCTATGCCTGCCGTCCACACCGTTCCACAGTATAAATATGCTACAGGAGTT
TGCAATCCTCCACAACACCTTAGCACACAGCCACCAGTTACCATGTAGCAGCAGCCTGCTGCTCATGTACAAGGTCAGGA
GCCTTTGACTGCTCCCATATTGGCATCTGCCCCTCCTCAAGAGCAAAAGCAAATGCTGGGTGAACGGCGGTTTCCTCTAA
TTCAAGCCAGGCAACCTACTCTAGCTGGTAAAGTCACTGCATGTTGTTGGAGATGGATAATTCAGGACTTCTTCATGTGC
TGGGGTCTCCAGAGCCTCTTCGTTCTACAGCTGATGGAAGCTGTCACTGTTCTTCAAGCCCATCGAGCTAGAGAGGCTGC
CCAGAAAGCAGTCAGCAGTGCCACTGGTGTGCCAACTGTT

ORF - retro_mluc_579 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.79 %
Parental protein coverage: 90.87 %
Number of stop codons detected: 1
Number of frameshifts detected: 7


Retrocopy - Parental Gene Alignment:

ParentalQAGGRAERALDTMNFDVI-KGKPVRIMWSQRDPSLRKSGVGNIFIK-NLDKSIDNKALYDTFSAFGNILS
Q....AERA..T.N.DVI.KGKPV..MWS.RDPSL.KSGV.NI.I..N..KSI.NKAL.DTFSAFGNILS
RetrocopyQQPAAAERAVHTTNLDVI<KGKPVCSMWSRRDPSLHKSGVDNIVIR<NWGKSIENKALHDTFSAFGNILS
ParentalCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT-NVYIK
CKVVCDENG..GYGFVHFETQ.AAERA.EKM.GMLLN.R.VFVGR.KS.KEREA..GARA.EFT..V.IK
RetrocopyCKVVCDENGPQGYGFVHFETQGAAERATEKMKGMLLNGRRVFVGRSKSSKEREAGWGARATEFT<HVHIK
ParentalNFGEDMDDERLKD-LFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR
NFGEDMDDERLKD.LFGKFGPALSVKVM..E.G.SKGFGFVSFER.ED.QKAVDE.NGKELNGKQIY..R
RetrocopyNFGEDMDDERLKD<LFGKFGPALSVKVMMGEGGTSKGFGFVSFERDEDTQKAVDEVNGKELNGKQIYISR
ParentalAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF
A.K.VE.QTEL..K.E.M.QDR.TRYQGVNLYVKNLDDGIDD.RL.KEFSPF.TIT.AK.MMEGG.SKGF
RetrocopyAHKTVEWQTELRCKVEHMNQDRATRYQGVNLYVKNLDDGIDDGRLQKEFSPFDTITGAKFMMEGGPSKGF
ParentalGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP-YQPAP
GFV.FSSPEEATKA.TEMNGRIVATK.L.VALAQ.KEE.QAHLTNQYMQR.ASVRAVPNPVI.P......
RetrocopyGFVRFSSPEEATKAITEMNGRIVATKSLCVALAQCKEEHQAHLTNQYMQRVASVRAVPNPVILP<RHQPA
ParentalPSGYFMAAIPQTQNRAAYYPP-SQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV
P......A........A.Y.P..QIAQLRP.....AQGARPHPFQN.PGA..PAAP.PPFST.RPASSQV
RetrocopyPPSGYFLAAISQTQNRAAYYPPRQIAQLRP----RAQGARPHPFQNLPGAFCPAAPGPPFSTVRPASSQV
ParentalPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVAQYKYAPGVRNPQQHLNAQPQVTM-QQPAVHVQGQ
P.VMSTQRVANTSTQTMGPRP.AAAAAA.PAV.TV.QYKYA.GV.NP.QHL..QP.VTM.QQPA.HVQGQ
RetrocopyPHVMSTQRVANTSTQTMGPRPVAAAAAAMPAVHTVPQYKYATGVCNPPQHLSTQPPVTM*QQPAAHVQGQ
ParentalEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITG-MLLEIDNSELLHMLESPESLRSKVD-EA
EPLTA..LASAPPQEQKQMLGER.FPLIQA..PTLAGK.T..MLLE.DNS.LLH.L.SPE.LRS..D.EA
RetrocopyEPLTAPILASAPPQEQKQMLGERRFPLIQARQPTLAGKVTA<MLLEMDNSGLLHVLGSPEPLRSTAD>EA
ParentalVAVLQAHQAKEAAQKAVNSATGVPTV
V.VLQAH.A.EAAQKAV.SATGVPTV
RetrocopyVTVLQAHRAREAAQKAVSSATGVPTV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_579 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 20 parental genes, and 36 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000003481 retrocopy
retro_amel_1650,
Choloepus hoffmanni ENSCHOG000000081781 retrocopy
retro_chof_2531,
Callithrix jacchus ENSCJAG000000158335 retrocopies
retro_cjac_1586, retro_cjac_2571, retro_cjac_3218, retro_cjac_4039, retro_cjac_41,
Cavia porcellus ENSCPOG000000129171 retrocopy
retro_cpor_1324,
Dasypus novemcinctus ENSDNOG000000087182 retrocopies
retro_dnov_1530, retro_dnov_2259,
Felis catus ENSFCAG000000018741 retrocopy
retro_fcat_1927,
Homo sapiens ENSG000000707561 retrocopy
retro_hsap_88,
Gorilla gorilla ENSGGOG000000067851 retrocopy
retro_ggor_1986,
Myotis lucifugus ENSMLUG000000005301 retrocopy
retro_mluc_1093,
Myotis lucifugus ENSMLUG000000063241 retrocopy
retro_mluc_509,
Myotis lucifugus ENSMLUG000000120682 retrocopies
retro_mluc_228, retro_mluc_397,
Myotis lucifugus ENSMLUG00000012245 1 retrocopy
retro_mluc_579 ,
Macaca mulatta ENSMMUG000000177862 retrocopies
retro_mmul_1462, retro_mmul_895,
Monodelphis domestica ENSMODG000000062224 retrocopies
retro_mdom_123, retro_mdom_1867, retro_mdom_216, retro_mdom_43,
Mus musculus ENSMUSG000000222832 retrocopies
retro_mmus_102, retro_mmus_2164,
Oryctolagus cuniculus ENSOCUG000000043541 retrocopy
retro_ocun_13,
Pongo abelii ENSPPYG000000187903 retrocopies
retro_pabe_2373, retro_pabe_68, retro_pabe_854,
Rattus norvegicus ENSRNOG000000086393 retrocopies
retro_rnor_1228, retro_rnor_2321, retro_rnor_265,
Sarcophilus harrisii ENSSHAG000000112671 retrocopy
retro_shar_24,
Tarsius syrichta ENSTSYG000000042292 retrocopies
retro_tsyr_1743, retro_tsyr_273,


Copyright © RetrogeneDB 2014-2017