RetrogeneDB ID: retro_mluc_1130

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429797:8761300..8762310(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: METTL16
• Ensembl ID: ENSMLUG00000003531
• Aliases: None
• Description: None

Sequence

>retro_mluc_1130
TATTTTCTTGCAACAGAAGTAGATGATATGTGCTTCAACTATGCAAAGAAAAATGTGGAACAGAATAACTTATCTGATCT
TATAAAAGCTGTAAAGGTACCACAGAAGACACTTCTAATGGATGCTCTTAAAAAAGAATCTGAGATAACCTATGACTTTT
GCCTGTGCGATCCTCCTCTTGCCAATCAGATGGAAGCCCAGGGAATAAACTCTTGAAATCCTTGAAGACCTCCAACTAGT
TCGGTAAATACAGGAGGTATCACAGAGATCATGGCAGAAGGAGGCGAATTAGAGTTTGTTAAAAGGATCATCCATGACAG
TATACAACTTTAAAAAAGACTGTTGTGGGTTAGCTATATGCTGGGAAAGAAATGCAGCCTTGCTGCTCTGAAGGAAGAAC
TTCGAATAGAAGGGATTCCTAAAGTCACCTACACTGAATTCTGTCAAGGTCGGACGATGAGATGGGCCTTAGCTTGGAGT
TTTTATGACGATGTAACAGTACCACCACCACCAAGTAAGCGAAGAAAATTAGAGAAGCCAAGGAAACCCGTCCCATTTGT
AGTGCTGGAGTCTGTGATGAAAAGAATTATCCCTCAAACCATCACCTTTGGGCTCTGAGACAGTGGGAGAAGGCAAAGTC
GTTGTGATGACATGGATTGAAGAAAATCTCACTGATCTAAAGGTCCAGCATAAACGAGTTCTGTACAGAAAAGTGGAAGT
TAGCCTTTTCCTAACAGCCATAGAAAACTCCTGGTTTCATTTCAGGAGAAAGAAAAGAGAACAAGTGAGACAACTGAGAG
AAGTTCCTGGAGTTCCTGAAGACATCATCCAAGCCTCGGAAGAGAAAAAAAATCACCCCCAAAGAGTCTGGCAGTAGCCA
AGATTTGTCCGAGGGCCCCTGGGACAGTGTCCTGTGTGGGTCTGCTCTACGGGAAGGCAAGTCAGCCACTGTTGAGGGCC
ATGGCCCAATCCAGGATTTGCTTTCCCAGGAAGGAAACCCAGAACCCATC

Alignment

ORF - retro_mluc_1130 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.83 %
• Parental protein coverage: 59.22 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGV
          YFLATEVDDMCFNYAKKNVEQNNLSDLIK.VKVPQKTLLMDALK.ESEI.YDFC.C.PP..ANQ.EA.G.
Retrocopy YFLATEVDDMCFNYAKKNVEQNNLSDLIKAVKVPQKTLLMDALKKESEITYDFCLCDPPL-ANQMEAQGI

Parental  NSRNSRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRVQGV
          NS.N..RPP.SSVNTGGITEIMAEGGELEFVKRIIHDS.QL.KRL.W.S.MLGKKCSLA.LKEELR..G.
Retrocopy NS*NP*RPPTSSVNTGGITEIMAEGGELEFVKRIIHDSIQL*KRLLWVSYMLGKKCSLAALKEELRIEGI

Parental  PKVTYTEFCQGRTMRWALAWSFYDDVTVPSPPSKRRKLEKPRKPITFVVLESVM-KELSLKASSLGSGTV
          PKVTYTEFCQGRTMRWALAWSFYDDVTVP.PPSKRRKLEKPRKP..FVVLESVM.KELSLK.S.LGS.TV
Retrocopy PKVTYTEFCQGRTMRWALAWSFYDDVTVPPPPSKRRKLEKPRKPVPFVVLESVM>KELSLKPSPLGSETV

Parental  EEGIVVVTTWIEKILTDLKVQHKRVPCGKGEVSLFLTAIENSWIHLRRKKRERVRQLREVPRAPEDVIQA
          .EG.VVV.TWIE..LTDLKVQHKRV...K.EVSLFLTAIENSW.H.RRKKRE.VRQLREVP..PED.IQA
Retrocopy GEGKVVVMTWIEENLTDLKVQHKRVLYRKVEVSLFLTAIENSWFHFRRKKREQVRQLREVPGVPEDIIQA

Parental  LEE-KKFTPEESGSSQDLAQGPPES---GPALQEGESATVEGHGPIQDSLFQEGNPGPM
          .EE....TP.ESGSSQDL..GP..S...G.AL.EG.SATVEGHGPIQD.L.QEGNP.P.
Retrocopy SEE>XXXTPKESGSSQDLSEGPWDSVLCGSALREGKSATVEGHGPIQDLLSQEGNPEPI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1130 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000017440	2 retrocopies	retro_btau_1159, retro_btau_1533,
Myotis lucifugus	ENSMLUG00000003531	2 retrocopies	retro_mluc_1130 , retro_mluc_1625,
Monodelphis domestica	ENSMODG00000010765	2 retrocopies	retro_mdom_305, retro_mdom_339,
Otolemur garnettii	ENSOGAG00000004504	1 retrocopy	retro_ogar_491,
Ictidomys tridecemlineatus	ENSSTOG00000011876	1 retrocopy	retro_itri_1568,