RetrogeneDB ID: retro_mluc_1625

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429874:145620..146556(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: METTL16
• Ensembl ID: ENSMLUG00000003531
• Aliases: None
• Description: None

Sequence

>retro_mluc_1625
TGTATGCTGGGAAAGAAATGAAGCCTTGCTCCTCCGAAGGAAGAACTTGGAGTGCAAGGGGTTCCTAAAGTCACCTACAT
GGAACTCTGTCAATACCGGACAATGAGATGGGCCTTAGCTTGGAGTTTTCATGGTGACGTAACAGTACCATCACCACCAA
GTAAGCAAAGAAAATTAGAGAAACCCATCACATTTGTAGTGTTGGAGTCTGTGATGAAAAAATTATCCCTCAAAGCATCA
CCTTTGGGCTCTGAGACAATGGAAGAAGGCATGGTAGTTGTGACAACATGGATTGAAAAAATTCTCACTGATCTAAAGGT
CCAGCATAAATGAGTTCCATGTGGAAAGGGGGAAGTTAGCCTTTTCCTAACAGCCATAGACAACTCCTGGATTCATTTAA
GGAGAAAGAAAAGAGAATGAGTGAGACAATTGAGAGAAGTTCCTCAAGCTCCTGAGGACGTCATCCAAATCTTGGAAGAG
AAAAAGCTAACCCCTGAAGAGCCTGGAAGTAGCCAAGATTTGGCCTACGGTCCCTGGAAGAGTGTTCTGTGCGGGCCTGC
TCTACAGGAAGGCGAGTCAGCCACTGTTGAGGGCCATGGCCCAATCCAGGTTTCGCTTTCCCAGGAAGGAAACCCAGAAC
CAATGGAGGTTGAAAGGAGTGAGGAAAAGGGAGACATGGAGGTTGGGGAAAGTTGTAAAGGCTCTAGCAATGGATCCCAG
GACCTAGAGGCTTCTGAGCAGCTCATTAACCCAGTGTCTGAAAAAAGGTATCCTTTCCAAGGAGTGGCTGGACATTACCT
TTTCAAATGTTTGATGAACATTAAGGAGGTAGATGATGCCTCAGTTGAAATGCACTGGGTTGAGGGTCAGAACAGGGATT
TGATGAACCAGCTTTGTACCTATATACATAACCAGATTTTCAGGCTTGTTGCCAGT

Alignment

ORF - retro_mluc_1625 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.08 %
• Parental protein coverage: 55.89 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  CMLGKKCSLAPLKEELRVQGVPKVTYTEFCQGRTMRWALAWSFYDDVTVPSPPSKRRKLEKPRKPITFVV
          CMLGKK.SLAP.KEEL.VQGVPKVTY.E.CQ.RTMRWALAWSF..DVTVPSPPSK.RKLE...KPITFVV
Retrocopy CMLGKK*SLAPPKEELGVQGVPKVTYMELCQYRTMRWALAWSFHGDVTVPSPPSKQRKLE---KPITFVV

Parental  LESVMKELSLKASSLGSGTVEEGIVVVTTWIEKILTDLKVQHKRVPCGKGEVSLFLTAIENSWIHLRRKK
          LESVMK.LSLKAS.LGS.T.EEG.VVVTTWIEKILTDLKVQHK.VPCGKGEVSLFLTAI.NSWIHLRRKK
Retrocopy LESVMKKLSLKASPLGSETMEEGMVVVTTWIEKILTDLKVQHK*VPCGKGEVSLFLTAIDNSWIHLRRKK

Parental  RERVRQLREVPRAPEDVIQALEEKKFTPEESGSSQDLAQGPPES---GPALQEGESATVEGHGPIQDSLF
          RE.VRQLREVP.APEDVIQ.LEEKK.TPEE.GSSQDLA.GP..S...GPALQEGESATVEGHGPIQ.SL.
Retrocopy RE*VRQLREVPQAPEDVIQILEEKKLTPEEPGSSQDLAYGPWKSVLCGPALQEGESATVEGHGPIQVSLS

Parental  QEGNPGPMEDERSEEKGDMEVLESCKGSSNGAQDREASEQLINPVSEKEHPLQGVAGHYLFKCLINIKKE
          QEGNP.PME.ERSEEKGDMEV.ESCKGSSNG.QD.EASEQLINPVSEK..P.QGVAGHYLFKCL.NI.KE
Retrocopy QEGNPEPMEVERSEEKGDMEVGESCKGSSNGSQDLEASEQLINPVSEKRYPFQGVAGHYLFKCLMNI-KE

Parental  VDDALVEMHWVEGQNRDLMNQLCTYIRNQIFRLVAS
          VDDA.VEMHWVEGQNRDLMNQLCTYI.NQIFRLVAS
Retrocopy VDDASVEMHWVEGQNRDLMNQLCTYIHNQIFRLVAS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1625 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000017440	2 retrocopies	retro_btau_1159, retro_btau_1533,
Myotis lucifugus	ENSMLUG00000003531	2 retrocopies	retro_mluc_1130, retro_mluc_1625 ,
Monodelphis domestica	ENSMODG00000010765	2 retrocopies	retro_mdom_305, retro_mdom_339,
Otolemur garnettii	ENSOGAG00000004504	1 retrocopy	retro_ogar_491,
Ictidomys tridecemlineatus	ENSSTOG00000011876	1 retrocopy	retro_itri_1568,