RetrogeneDB ID: retro_mluc_1143

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429799:1660466..1660947(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022536
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RPS10
• Ensembl ID: ENSMLUG00000007495
• Aliases: None
• Description: None

Sequence

>retro_mluc_1143
CTGATGCCCAAGAAGAACCAGATTTCCATTTACAAACTTCTTTTTAAGGAGGGAGTGATGGTGGCCAAGAAGGATGTGCA
CATGCCTAAACACCCCGAGCTGGCAGACAAGAACATGCCTAATCTTCACGTCATGAAGGCATGCAGTCTCTCAAATCATG
AGGCTACGTGAAGGAACAGTTTGCCTGGAAACATTTCTACTGGTACCTTTCCAACAAGGGCATCCGGTATCTCCGCAATT
ACCTCCACCTGCCCCCAGAGATCGTGGTCTGCCACTCTGCGCCTGAGACTGGCAGGCCAAGGCCCAAAGGTCTGGAGGGC
GATGGACCTGCAAGACTCACACTACGGGAAGCCAACAGAGACACGTACAGACAGGGTGCTGTGCCCCCTGGTGCTGACAA
GAAAGCTGAGCCAGGGCTAAGTCAGCCACCGAATTCCAGTTTAGAGGCAGATTTGGTCGTGGACGTAGTCAACTACCTCA
G

Alignment

ORF - retro_mluc_1143 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.72 %
• Parental protein coverage: 99.39 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKA-MQSLKSRGYVKEQFAWRHFYWY
          LMPKKN.I.IY.LLFKEGVMVAKKDVHMPKHPELADKN.PNLHVMKA.MQSLKS.GYVKEQFAW.HFYWY
Retrocopy LMPKKNQISIYKLLFKEGVMVAKKDVHMPKHPELADKNMPNLHVMKA<MQSLKS*GYVKEQFAWKHFYWY

Parental  LTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEADRDTYRRSAVPPGADKKA
          L.N.GI.YLR.YLHLPPEIV......S.PETGRPRPKGLEG..PARLT..EA.RDTYR..AVPPGADKKA
Retrocopy LSNKGIRYLRNYLHLPPEIV---VCHSAPETGRPRPKGLEGDGPARLTLREANRDTYRQGAVPPGADKKA

Parental  EAG-AGSATEFQFRRGFGRGRGQPPQ
          E.G.A.SATEFQFR..FGRGR.Q.PQ
Retrocopy EPG<AKSATEFQFRGRFGRGRSQLPQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1143 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000015598	3 retrocopies	retro_btau_1334, retro_btau_844, retro_btau_989,
Latimeria chalumnae	ENSLACG00000017219	1 retrocopy	retro_lcha_26,
Loxodonta africana	ENSLAFG00000008539	1 retrocopy	retro_lafr_756,
Myotis lucifugus	ENSMLUG00000007495	2 retrocopies	retro_mluc_1143 , retro_mluc_2128,
Monodelphis domestica	ENSMODG00000013929	2 retrocopies	retro_mdom_1889, retro_mdom_437,
Pongo abelii	ENSPPYG00000016516	2 retrocopies	retro_pabe_2319, retro_pabe_97,
Sarcophilus harrisii	ENSSHAG00000000731	3 retrocopies	retro_shar_243, retro_shar_334, retro_shar_724,