RetrogeneDB ID: retro_mluc_1257

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429809:6508135..6508915(-)
• Located in intron of: ENSMLUG00000006574

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012235
• Aliases: None
• Description: None

Sequence

>retro_mluc_1257
GAGAAGCAGGAGCCGCTGGGCAGCAACGCCGAAGGTGTTAACTGTCTTGCCTATGATGAAGCCATGATGGCTTAGCAGGA
CCGAATTCAACAAGAGATTGCTGTGCAGAACCCCCTGGTCTCGGAGCAGCTGGAGCTCTCGGTCCTGTACAAGGAGTATG
CTGAGGACGACAATATCTACCAACAGAAGATCAAGGACCTCCACAAAAAGTACTCGTACATCTGCAAGACCAGGCCCGAC
GGGAACTGCTTCTACCGAGCCTTCGGCTTCTCGCACCTGGAGGCGCTGCTGGATGACAGCAAGGAGTTGCAGAGGTTCAA
GGCTGTGTCTGCCAAGAGCAAAGAAGACCTGGTGTCCCAGGGCTTCACCGAGTTCACAATTGAGGATTTCCACAACACGT
TCATGGACCTGATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCCGACCTGCTGGCTTCCTTCAACGACCAGAGCACCTCG
GACTACCTGGTGGTCTACCTGCGGCTGCTCACCTCTGGCTACCTGCAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGA
GGGTGGGCGGACTGTCAAAGAGTTCTGCCAGCAGGAGGTGGAGCCCATGTGCAAGGAGAGCGACCACATCCACATCATCG
CGCTGGCCCAGGCCCTCAACGTCTCCATCCAGGTGGAGTACATGGGCCACGGCACCACCAACCCGCACATCTTCCCCGAG
GGCTCCGAGCCCAAGGTCTACCTTCTCTACCGGCCTGGACACTACGACATCCTCTACAAA

Alignment

ORF - retro_mluc_1257 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.82 %
• Parental protein coverage: 87.38 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QKQEPLGSDAEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKK
          .KQEPLGS.AEGVNCLAYDEA.MA.QDRIQQEIAVQNPLVSE.LELSVLYKEYAEDDNIYQQKIKDLHKK
Retrocopy EKQEPLGSNAEGVNCLAYDEAMMA*QDRIQQEIAVQNPLVSEQLELSVLYKEYAEDDNIYQQKIKDLHKK

Parental  YSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQ
          YSYI.KTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQ
Retrocopy YSYICKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQ

Parental  VEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHI
          VEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHI
Retrocopy VEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHI

Parental  HIIALAQALNVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK
          HIIALAQALNVSIQVEYM..G...TTNPHIFPEGSEPKVYLLYRPGHYDILYK
Retrocopy HIIALAQALNVSIQVEYMGHG---TTNPHIFPEGSEPKVYLLYRPGHYDILYK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1257 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000018084	1 retrocopy	retro_amel_1270,
Bos taurus	ENSBTAG00000003967	1 retrocopy	retro_btau_1119,
Canis familiaris	ENSCAFG00000014729	2 retrocopies	retro_cfam_1376, retro_cfam_2023,
Equus caballus	ENSECAG00000002621	1 retrocopy	retro_ecab_760,
Myotis lucifugus	ENSMLUG00000012235	2 retrocopies	retro_mluc_1257 , retro_mluc_614,
Mustela putorius furo	ENSMPUG00000013314	1 retrocopy	retro_mputfur_1057,
Pteropus vampyrus	ENSPVAG00000017099	2 retrocopies	retro_pvam_131, retro_pvam_274,
Rattus norvegicus	ENSRNOG00000021175	1 retrocopy	retro_rnor_2431,
Sarcophilus harrisii	ENSSHAG00000004156	1 retrocopy	retro_shar_87,