RetrogeneDB ID: retro_mputfur_1057

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897003.1:1380961..1381438(-)
• Located in intron of: ENSMPUG00000010748

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OTUB1
• Ensembl ID: ENSMPUG00000013314
• Aliases: None
• Description: OTU domain, ubiquitin aldehyde binding 1 [Source:HGNC Symbol;Acc:23077]

Sequence

>retro_mputfur_1057
CTGGCCTATGATGAAGATACCGTGGCTCAGCAGGACTAAATTCAATAAAAGATTGCTGTGCAGAACCCTCTGTTCTTGGA
GCTGTTGGAGCTGACATTCTGTACAGGGAGTACGCTGAGGATGACATCTGTCAACAGAAGATTGAGCATCTTTACCAAAA
ATTCTTGTACATCTATAAGACCAGGCTTTATGTGAACTGCTTCTCTTGCGCTTCTGGATGCTTGCACCTGGAGGTGCTGC
TGAATGTGAGCAAGGAGTTTTAGCAATTCAAGCCTGTGTCTGCCAAGATCAAAGAGAACCTCGTCTCCCAGGCCTTTACT
GAGTTCACGGTTTAAACATTTCCACCCATGTTTTACAGACCTGATTGAGCAGATGGAGAAGCATACCTCAGTAGTCAATC
TTTTGGCCTCCTTCAGCAGCTAGGGGACCTTGGATTTCCTGTTAGTCTCTCTGCAACTGCTCACCTCAGGCTACCTA

Alignment

ORF - retro_mputfur_1057 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.96 %
• Parental protein coverage: 59.04 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LAYDEAIMAQQDRIQQEIAVQNPLVSERLELS-VLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCF
          LAYDE...AQQD.IQ..IAVQNPL..E.LEL...LY.EYAEDD.I.QQKI..L..K..YI.KTR...NCF
Retrocopy LAYDEDTVAQQD*IQ*KIAVQNPLFLELLELT<ILYREYAEDD-ICQQKIEHLYQKFLYIYKTRLYVNCF

Parental  YRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTI-EDFHNTFMDLIEQVEKQTSVADLLAS
          ..A.G..HLE.LL..SKE...FK.VSAK.KE.LVSQ.FTEFT....FH..F.DLIEQ.EK.TSV..LLAS
Retrocopy SCASGCLHLEVLLNVSKEF*QFKPVSAKIKENLVSQAFTEFTV>KHFHPCFTDLIEQMEKHTSVVNLLAS

Parental  FNDQSTSDYLVVYLRLLTSGYL
          F....T.D.L.V.L.LLTSGYL
Retrocopy FSS*GTLDFLLVSLQLLTSGYL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1057 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1057 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000018084	1 retrocopy	retro_amel_1270,
Bos taurus	ENSBTAG00000003967	1 retrocopy	retro_btau_1119,
Canis familiaris	ENSCAFG00000014729	2 retrocopies	retro_cfam_1376, retro_cfam_2023,
Equus caballus	ENSECAG00000002621	1 retrocopy	retro_ecab_760,
Myotis lucifugus	ENSMLUG00000012235	2 retrocopies	retro_mluc_1257, retro_mluc_614,
Mustela putorius furo	ENSMPUG00000013314	1 retrocopy	retro_mputfur_1057 ,
Pteropus vampyrus	ENSPVAG00000017099	2 retrocopies	retro_pvam_131, retro_pvam_274,
Rattus norvegicus	ENSRNOG00000021175	1 retrocopy	retro_rnor_2431,
Sarcophilus harrisii	ENSSHAG00000004156	1 retrocopy	retro_shar_87,